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Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis

experiment: Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011)

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 21 Computational annotation submissions for this experiment:
DCC id Name developmental stage compound strain Embargoed until Features, GBrowse and Data Files
modENCODE_4691


Related to: modENCODE_3724
modENCODE_4290

Dm Treatment Expression RNA-seq Zn Treatment 5mM Zinc Late Third Instar Larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
zinc dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4691_merged.sorted


2 files Download data files
modENCODE_4683


Related to: modENCODE_3724
modENCODE_4282

Dm Treatment Expression RNA-seq Cu Treatment 0.5mM Copper Third Instar Larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
copper(2+) sulfate [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4683_merged.sorted


2 files Download data files
modENCODE_4684


Related to: modENCODE_3724
modENCODE_4283

Dm Treatment Expression RNA-seq Cu Treatment 15mM Copper Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
copper(2+) sulfate [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4684_merged.sorted


2 files Download data files
modENCODE_4686


Related to: modENCODE_3724
modENCODE_4285

Dm Treatment Expression RNA-seq Paraquat Treatment 10mM Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
paraquat [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4686_merged.sorted


2 files Download data files
modENCODE_4687


Related to: modENCODE_3724
modENCODE_4286

Dm Treatment Expression RNA-seq Paraquat Treatment 5mM Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
paraquat [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4687_merged.sorted


2 files Download data files
modENCODE_4679


Related to: modENCODE_3724
modENCODE_4278

Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 6hr uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4679_merged.sorted


2 files Download data files
modENCODE_4688


Related to: modENCODE_3724
modENCODE_4287

Dm Treatment Expression RNA-seq Rotenone Treatment 2ug ml Third Instar Larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
rotenone [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4688_merged.sorted


2 files Download data files
modENCODE_4680


Related to: modENCODE_3724
modENCODE_4279

Dm Treatment Expression RNA-seq Cd Treatment 0.1M Cdcl2 Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4680_merged.sorted


2 files Download data files
modENCODE_4689


Related to: modENCODE_3724
modENCODE_4288

Dm Treatment Expression RNA-seq Rotenone Treatment 8ug ml Third Instar Larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
rotenone [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4689_merged.sorted


2 files Download data files
modENCODE_4690


Related to: modENCODE_3724
modENCODE_4289

Dm Treatment Expression RNA-seq Zn Treatment 4.5mM Zinc Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
zinc dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4690_merged.sorted


2 files Download data files
modENCODE_4685


Related to: modENCODE_3725
modENCODE_4284

Dm Treatment Expression RNA-seq Heat shock 1hr@36C wet heat 30min@25C Four Day Adults uniquely mapping reads Dmel r5 alignment adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4685_merged.sorted


2 files Download data files
modENCODE_4676


Related to: modENCODE_3724
modENCODE_4275

Dm Treatment Expression RNA-seq Caffeine Treatment Pre Lethal Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4676_merged.sorted


2 files Download data files
modENCODE_4677


Related to: modENCODE_3724
modENCODE_4276

Dm Treatment Expression RNA-seq Cd Treatment 0.05M Cdcl2 Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4677_merged.sorted


2 files Download data files
modENCODE_4678


Related to: modENCODE_3724
modENCODE_4277

Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 12hr uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
cadmium dichloride [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4678_merged.sorted


2 files Download data files
modENCODE_4681


Related to: modENCODE_3725
modENCODE_4280

Dm Treatment Expression RNA-seq Cold treatment Method 1 Four Day Adults uniquely mapping reads Dmel r5 alignment adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4681_merged.sorted


2 files Download data files
modENCODE_4672


Related to: modENCODE_3724
modENCODE_4271

Dm Treatment Expression RNA-seq 2.5% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4672_merged.sorted


2 files Download data files
modENCODE_4682


Related to: modENCODE_3725
modENCODE_4281

Dm Treatment Expression RNA-seq Cold Treatment Method 2 Four Day Adults uniquely mapping reads Dmel r5 alignment adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4682_merged.sorted


2 files Download data files
modENCODE_4673


Related to: modENCODE_3724
modENCODE_4272

Dm Treatment Expression RNA-seq 5% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4673_merged.sorted


2 files Download data files
modENCODE_4674


Related to: modENCODE_3724
modENCODE_4273

Dm Treatment Expression RNA-seq Caffeine Treatment 1.5 mg ml Third instar larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4674_merged.sorted


2 files Download data files
modENCODE_4675


Related to: modENCODE_3724
modENCODE_4274

Dm Treatment Expression RNA-seq Caffeine Treatment 2.5 mg ml Four Day Adults uniquely mapping reads Dmel r5 alignment Adult mixed-sex flies [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4675_merged.sorted


2 files Download data files
modENCODE_4671


Related to: modENCODE_3724
modENCODE_4270

Dm Treatment Expression RNA-seq 10% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
ethanol [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: 4671_merged.sorted


2 files Download data files