modMine: Experiments

modENCODE | Help

The table data can be sorted according to the content of a given column, just click on the column header.

Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis

	experiment: Transcriptional Profiling of Compound-based treatments of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis	project: The Drosophila Transcriptome	PI: Sue Celniker	Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011)

There are 21 Computational annotation submissions for this experiment:

DCC id	Name	developmental stage	compound	strain	Embargoed until	Features, GBrowse and Data Files
modENCODE_4691 Related to: modENCODE_3724 modENCODE_4290	Dm Treatment Expression RNA-seq Zn Treatment 5mM Zinc Late Third Instar Larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	zinc dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4683 Related to: modENCODE_3724 modENCODE_4282	Dm Treatment Expression RNA-seq Cu Treatment 0.5mM Copper Third Instar Larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	copper(2+) sulfate [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4684 Related to: modENCODE_3724 modENCODE_4283	Dm Treatment Expression RNA-seq Cu Treatment 15mM Copper Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	copper(2+) sulfate [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4686 Related to: modENCODE_3724 modENCODE_4285	Dm Treatment Expression RNA-seq Paraquat Treatment 10mM Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	paraquat [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4687 Related to: modENCODE_3724 modENCODE_4286	Dm Treatment Expression RNA-seq Paraquat Treatment 5mM Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	paraquat [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4679 Related to: modENCODE_3724 modENCODE_4278	Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 6hr uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	cadmium dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4688 Related to: modENCODE_3724 modENCODE_4287	Dm Treatment Expression RNA-seq Rotenone Treatment 2ug ml Third Instar Larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	rotenone [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4680 Related to: modENCODE_3724 modENCODE_4279	Dm Treatment Expression RNA-seq Cd Treatment 0.1M Cdcl2 Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	cadmium dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4689 Related to: modENCODE_3724 modENCODE_4288	Dm Treatment Expression RNA-seq Rotenone Treatment 8ug ml Third Instar Larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	rotenone [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4690 Related to: modENCODE_3724 modENCODE_4289	Dm Treatment Expression RNA-seq Zn Treatment 4.5mM Zinc Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	zinc dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4685 Related to: modENCODE_3725 modENCODE_4284	Dm Treatment Expression RNA-seq Heat shock 1hr@36C wet heat 30min@25C Four Day Adults uniquely mapping reads Dmel r5 alignment	adult [ALL]		Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4676 Related to: modENCODE_3724 modENCODE_4275	Dm Treatment Expression RNA-seq Caffeine Treatment Pre Lethal Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	caffeine [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4677 Related to: modENCODE_3724 modENCODE_4276	Dm Treatment Expression RNA-seq Cd Treatment 0.05M Cdcl2 Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	cadmium dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4678 Related to: modENCODE_3724 modENCODE_4277	Dm Treatment Expression RNA-seq Cd Treatment 0.05mM CdCl2 Late Third Instar Larvae 12hr uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	cadmium dichloride [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4681 Related to: modENCODE_3725 modENCODE_4280	Dm Treatment Expression RNA-seq Cold treatment Method 1 Four Day Adults uniquely mapping reads Dmel r5 alignment	adult [ALL]		Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4672 Related to: modENCODE_3724 modENCODE_4271	Dm Treatment Expression RNA-seq 2.5% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	ethanol [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4682 Related to: modENCODE_3725 modENCODE_4281	Dm Treatment Expression RNA-seq Cold Treatment Method 2 Four Day Adults uniquely mapping reads Dmel r5 alignment	adult [ALL]		Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4673 Related to: modENCODE_3724 modENCODE_4272	Dm Treatment Expression RNA-seq 5% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	ethanol [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4674 Related to: modENCODE_3724 modENCODE_4273	Dm Treatment Expression RNA-seq Caffeine Treatment 1.5 mg ml Third instar larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	caffeine [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4675 Related to: modENCODE_3724 modENCODE_4274	Dm Treatment Expression RNA-seq Caffeine Treatment 2.5 mg ml Four Day Adults uniquely mapping reads Dmel r5 alignment	Adult mixed-sex flies [ALL]	caffeine [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files
modENCODE_4671 Related to: modENCODE_3724 modENCODE_4270	Dm Treatment Expression RNA-seq 10% EtOH Third Instar larvae uniquely mapping reads Dmel r5 alignment	L3 stage wandering larvae [ALL]	ethanol [ALL]	Oregon-R-modENCODE [ALL]	embargo expired	2 files Download data files

Questions? Comments? Click here!

Your name:
Your email address:
Subject:
Message:	---- Current page: ---- /release-33/experiment.do?experiment=Transcriptional+Profiling+of+Compound-based+treatments+of+D.+melanogaster+using+Illumina+poly(A)%2B+RNA-Seq+SPA%2BBowtie+analysis