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Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq multiply TopHat analysis

experiment: Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq multiply TopHat analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
Stranded RNA-seq analysis was performed on poly(A)+ RNA from various tissues dissected from various stages of D. melanogaster. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 29 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_4308


Related to: modENCODE_3207
modENCODE_4258

Dm Tissue Expression RNA-seq third instar larvae wandering stage carcass multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: L3_Carcass.merged.bam


1 files Download data files
modENCODE_4309


Related to: modENCODE_3207
modENCODE_4259

Dm Tissue Expression RNA-seq third instar larvae wandering stage digestive system multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: L3_DigestiveSystem.merged.bam


1 files Download data files
modENCODE_4319


Related to: modENCODE_3207
modENCODE_4269

Dm Tissue Expression RNA-seq WPP salivary glands multiply mapping reads L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: WPP_SalivaryGlands.merged.bam


1 files Download data files
modENCODE_4318


Related to: modENCODE_3207
modENCODE_4268

Dm Tissue Expression RNA-seq WPP fat body multiply mapping reads pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: WPP_FatBody.merged.bam


1 files Download data files
modENCODE_4316


Related to: modENCODE_3207
modENCODE_4266

Dm Tissue Expression RNA-seq virgin female eclosion + 4 days ovaries multiply mapping reads virgin female [ALL]
Oregon-R-modENCODE [ALL]
virgin adult ovaries [ALL]
embargo expired
GBrowse tracks: AdVirginF_Ecl_4days_Ovaries.merged.bam


1 files Download data files
modENCODE_4317


Related to: modENCODE_3207
modENCODE_4267

Dm Tissue Expression RNA-seq WPP+2d fat multiply mapping reads pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: WPP_2days_Fat.589_BS326.sorted.bam


1 files Download data files
modENCODE_4302


Related to: modENCODE_3207
modENCODE_4252

Dm Tissue Expression RNA-seq mixed males and females eclosion + 20 days carcass multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_20days_Carcass.merged.bam


1 files Download data files
modENCODE_4303


Related to: modENCODE_3207
modENCODE_4253

Dm Tissue Expression RNA-seq mixed males and females eclosion + 20 days digestive system multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_20days_DigestiveSystem.merged.bam


1 files Download data files
modENCODE_4304


Related to: modENCODE_3207
modENCODE_4254

Dm Tissue Expression RNA-seq mixed males and females eclosion + 4 days carcass multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_4days_Carcass.merged.bam


1 files Download data files
modENCODE_4305


Related to: modENCODE_3207
modENCODE_4255

Dm Tissue Expression RNA-seq mixed males and females eclosion + 4 days digestive system multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_4day_DigestiveSystem.merged.bam


1 files Download data files
modENCODE_4306


Related to: modENCODE_3207
modENCODE_4256

Dm Tissue Expression RNA-seq Pupae WPP+2d CNS multiply mapping reads Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: WPP_2days_CNS.merged.bam


1 files Download data files
modENCODE_4307


Related to: modENCODE_3207
modENCODE_4257

Dm Tissue Expression RNA-seq third instar larvae CNS multiply mapping reads Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: L3_CNS.merged.bam


1 files Download data files
modENCODE_4294


Related to: modENCODE_3207
modENCODE_4244

Dm Tissue Expression RNA-seq mated female eclosion + 4 days ovaries multiply mapping reads adult mated female [ALL]
Oregon-R-modENCODE [ALL]
mated adult ovaries [ALL]
embargo expired
GBrowse tracks: AdMatedF_Ecl_4days_Ovaries.merged.bam


1 files Download data files
modENCODE_4311


Related to: modENCODE_3207
modENCODE_4261

Dm Tissue Expression RNA-seq third instar larvae wandering stage imaginal discs multiply mapping reads L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
imaginal discs [ALL]
embargo expired
GBrowse tracks: L3_ImaginalDiscs.merged.bam


1 files Download data files
modENCODE_4310


Related to: modENCODE_3207
modENCODE_4260

Dm Tissue Expression RNA-seq third instar larvae wandering stage fat body multiply mapping reads pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: L3_FatBody.merged.bam


1 files Download data files
modENCODE_4292


Related to: modENCODE_3207
modENCODE_4242

Dm Tissue Expression RNA-seq mated female eclosion + 20 days heads multiply mapping reads adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedF_Ecl_20days_Heads.merged.bam


1 files Download data files
modENCODE_4293


Related to: modENCODE_3207
modENCODE_4243

Dm Tissue Expression RNA-seq mated female eclosion + 4 days heads multiply mapping reads adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedF_Ecl_4days_Heads.merged.bam


1 files Download data files
modENCODE_4315


Related to: modENCODE_3207
modENCODE_4265

Dm Tissue Expression RNA-seq virgin female eclosion + 4 days heads multiply mapping reads virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdVirginF_Ecl_4days_Heads.merged.bam


1 files Download data files
modENCODE_4314


Related to: modENCODE_3207
modENCODE_4264

Dm Tissue Expression RNA-seq virgin female eclosion + 20 days heads multiply mapping reads virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdVirginF_Ecl_20days_Heads.merged.bam


1 files Download data files
modENCODE_4313


Related to: modENCODE_3207
modENCODE_4263

Dm Tissue Expression RNA-seq virgin female eclosion + 1 day heads multiply mapping reads virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdVirginF_Ecl_1day_Heads.merged.bam


1 files Download data files
modENCODE_4312


Related to: modENCODE_3207
modENCODE_4262

Dm Tissue Expression RNA-seq third instar larvae wandering stage salivary glands multiply mapping reads L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: L3_SalivaryGlands.merged.bam


1 files Download data files
modENCODE_4297


Related to: modENCODE_3207
modENCODE_4247

Dm Tissue Expression RNA-seq mated male eclosion + 4 days accessory glands multiply mapping reads adult male [ALL]
Oregon-R-modENCODE [ALL]
male accessory glands [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_4days_AccessoryGlands.merged.bam


1 files Download data files
modENCODE_4298


Related to: modENCODE_3207
modENCODE_4248

Dm Tissue Expression RNA-seq mated male eclosion + 4 days heads multiply mapping reads adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_4days_Heads.merged.bam


1 files Download data files
modENCODE_4295


Related to: modENCODE_3207
modENCODE_4245

Dm Tissue Expression RNA-seq mated male eclosion + 1 day heads multiply mapping reads adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_1day_Heads.merged.bam


1 files Download data files
modENCODE_4296


Related to: modENCODE_3207
modENCODE_4246

Dm Tissue Expression RNA-seq mated male eclosion + 20 days heads multiply mapping reads adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_20days_Heads.merged.bam


1 files Download data files
modENCODE_4301


Related to: modENCODE_3207
modENCODE_4251

Dm Tissue Expression RNA-seq mixed males and females eclosion + 1 day digestive system multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_1day_DigestiveSystem.merged.bam


1 files Download data files
modENCODE_4291


Related to: modENCODE_3207
modENCODE_4241

Dm Tissue Expression RNA-seq mated female eclosion + 1 day heads multiply mapping reads adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: AdMatedF_Ecl_1day_Heads.merged.bam


1 files Download data files
modENCODE_4299


Related to: modENCODE_3207
modENCODE_4249

Dm Tissue Expression RNA-seq mated male eclosion + 4 days testes multiply mapping reads adult male [ALL]
Oregon-R-modENCODE [ALL]
testes [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_4days_Testes.merged.bam


1 files Download data files
modENCODE_4300


Related to: modENCODE_3207
modENCODE_4250

Dm Tissue Expression RNA-seq mixed males and females eclosion + 1 day carcass multiply mapping reads L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: AdMixedMF_Ecl_1day_Carcass.merged.bam


1 files Download data files