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Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis

experiment: Tissue-specific Transcriptional Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
Stranded RNA-seq analysis was performed on poly(A)+ RNA from various tissues dissected from various stages of D. melanogaster. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011)

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 29 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_4661


Related to: modENCODE_3207
modENCODE_4260

Dm Tissue Expression RNA-seq third instar larvae wandering stage fat body uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_4661.sorted


2 files Download data files
modENCODE_4660


Related to: modENCODE_3207
modENCODE_4259

Dm Tissue Expression RNA-seq third instar larvae wandering stage digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_4660.sorted


2 files Download data files
modENCODE_4663


Related to: modENCODE_3207
modENCODE_4262

Dm Tissue Expression RNA-seq third instar larvae wandering stage salivary glands uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: submission_4663.sorted


2 files Download data files
modENCODE_4662


Related to: modENCODE_3207
modENCODE_4261

Dm Tissue Expression RNA-seq third instar larvae wandering stage imaginal discs uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
imaginal discs [ALL]
embargo expired
GBrowse tracks: submission_4662.sorted


2 files Download data files
modENCODE_4657


Related to: modENCODE_3207
modENCODE_4256

Dm Tissue Expression RNA-seq Pupae WPP+2d CNS uniquely mapping reads Dmel r5 alignment Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: submission_4657.sorted


2 files Download data files
modENCODE_4656


Related to: modENCODE_3207
modENCODE_4255

Dm Tissue Expression RNA-seq mixed males and females eclosion + 4 days digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_4656.sorted


2 files Download data files
modENCODE_4659


Related to: modENCODE_3207
modENCODE_4258

Dm Tissue Expression RNA-seq third instar larvae wandering stage carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_4659.sorted


2 files Download data files
modENCODE_4658


Related to: modENCODE_3207
modENCODE_4257

Dm Tissue Expression RNA-seq third instar larvae CNS uniquely mapping reads Dmel r5 alignment Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: submission_4658.sorted


2 files Download data files
modENCODE_4645


Related to: modENCODE_3207
modENCODE_4244

Dm Tissue Expression RNA-seq mated female eclosion + 4 days ovaries uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Oregon-R-modENCODE [ALL]
mated adult ovaries [ALL]
embargo expired
GBrowse tracks: submission_4645.sorted


2 files Download data files
modENCODE_4668


Related to: modENCODE_3207
modENCODE_4267

Dm Tissue Expression RNA-seq WPP+2d fat uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_4668.sorted


2 files Download data files
modENCODE_4642


Related to: modENCODE_3207
modENCODE_4241

Dm Tissue Expression RNA-seq mated female eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4642.sorted


2 files Download data files
modENCODE_4669


Related to: modENCODE_3207
modENCODE_4268

Dm Tissue Expression RNA-seq WPP fat body uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_4669.sorted


2 files Download data files
modENCODE_4665


Related to: modENCODE_3207
modENCODE_4264

Dm Tissue Expression RNA-seq virgin female eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4665.sorted


2 files Download data files
modENCODE_4643


Related to: modENCODE_3207
modENCODE_4242

Dm Tissue Expression RNA-seq mated female eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4643.sorted


2 files Download data files
modENCODE_4654


Related to: modENCODE_3207
modENCODE_4253

Dm Tissue Expression RNA-seq mixed males and females eclosion + 20 days digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_4654.sorted


2 files Download data files
modENCODE_4670


Related to: modENCODE_3207
modENCODE_4269

Dm Tissue Expression RNA-seq WPP salivary glands uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: submission_4670.sorted


2 files Download data files
modENCODE_4667


Related to: modENCODE_3207
modENCODE_4266

Dm Tissue Expression RNA-seq virgin female eclosion + 4 days ovaries uniquely mapping reads Dmel r5 alignment virgin female [ALL]
Oregon-R-modENCODE [ALL]
virgin adult ovaries [ALL]
embargo expired
GBrowse tracks: submission_4667.sorted


2 files Download data files
modENCODE_4664


Related to: modENCODE_3207
modENCODE_4263

Dm Tissue Expression RNA-seq virgin female eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4664.sorted


2 files Download data files
modENCODE_4646


Related to: modENCODE_3207
modENCODE_4245

Dm Tissue Expression RNA-seq mated male eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4646.sorted


2 files Download data files
modENCODE_4647


Related to: modENCODE_3207
modENCODE_4246

Dm Tissue Expression RNA-seq mated male eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4647.sorted


2 files Download data files
modENCODE_4666


Related to: modENCODE_3207
modENCODE_4265

Dm Tissue Expression RNA-seq virgin female eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4666.sorted


2 files Download data files
modENCODE_4644


Related to: modENCODE_3207
modENCODE_4243

Dm Tissue Expression RNA-seq mated female eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4644.sorted


2 files Download data files
modENCODE_4653


Related to: modENCODE_3207
modENCODE_4252

Dm Tissue Expression RNA-seq mixed males and females eclosion + 20 days carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_4653.sorted


2 files Download data files
modENCODE_4650


Related to: modENCODE_3207
modENCODE_4249

Dm Tissue Expression RNA-seq mated male eclosion + 4 days testes uniquely mapping reads Dmel r5 alignment adult male [ALL]
Oregon-R-modENCODE [ALL]
testes [ALL]
embargo expired
GBrowse tracks: submission_4650.sorted


2 files Download data files
modENCODE_4655


Related to: modENCODE_3207
modENCODE_4254

Dm Tissue Expression RNA-seq mixed males and females eclosion + 4 days carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_4655.sorted


2 files Download data files
modENCODE_4652


Related to: modENCODE_3207
modENCODE_4251

Dm Tissue Expression RNA-seq mixed males and females eclosion + 1 day digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_4652.sorted


2 files Download data files
modENCODE_4649


Related to: modENCODE_3207
modENCODE_4248

Dm Tissue Expression RNA-seq mated male eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_4649.sorted


2 files Download data files
modENCODE_4651


Related to: modENCODE_3207
modENCODE_4250

Dm Tissue Expression RNA-seq mixed males and females eclosion + 1 day carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_4651.sorted


2 files Download data files
modENCODE_4648


Related to: modENCODE_3207
modENCODE_4247

Dm Tissue Expression RNA-seq mated male eclosion + 4 days accessory glands uniquely mapping reads Dmel r5 alignment adult male [ALL]
Oregon-R-modENCODE [ALL]
male accessory glands [ALL]
embargo expired
GBrowse tracks: submission_4648.sorted


2 files Download data files