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Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis

experiment: Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)-site enriched RNA from various tissues dissected from various stages of D. melanogaster. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011).

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 29 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_5311


Related to: modENCODE_3207
modENCODE_5282

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 4 days digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_5311.sorted
GEO: GSM838773
GEO: GSM838774


2 files Download data files
modENCODE_5310


Related to: modENCODE_3207
modENCODE_5281

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 4 days carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_5310.sorted
GEO: GSM838749
GEO: GSM838775


2 files Download data files
modENCODE_5305


Related to: modENCODE_3207
modENCODE_5276

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days testes uniquely mapping reads Dmel r5 alignment adult male [ALL]
Oregon-R-modENCODE [ALL]
testes [ALL]
embargo expired
GBrowse tracks: submission_5305.sorted
GEO: GSM838770
GEO: GSM838771


2 files Download data files
modENCODE_5312


Related to: modENCODE_3207
modENCODE_5283

Dm Tissue polyA Sites Expression RNA-seq Pupae WPP+2d CNS uniquely mapping reads Dmel r5 alignment Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: submission_5312.sorted
GEO: GSM838796
GEO: GSM838797


2 files Download data files
modENCODE_5315


Related to: modENCODE_3207
modENCODE_5286

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_5315.sorted
GEO: GSM838753
GEO: GSM838789


2 files Download data files
modENCODE_5314


Related to: modENCODE_3207
modENCODE_5285

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_5314.sorted
GEO: GSM838790
GEO: GSM838791


2 files Download data files
modENCODE_5299


Related to: modENCODE_3207
modENCODE_5270

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5299.sorted
GEO: GSM838763
GEO: GSM838764


2 files Download data files
modENCODE_5309


Related to: modENCODE_3207
modENCODE_5280

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 20 days digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_5309.sorted
GEO: GSM838781
GEO: GSM838782


2 files Download data files
modENCODE_5300


Related to: modENCODE_3207
modENCODE_5271

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 4 days ovaries uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Oregon-R-modENCODE [ALL]
mated adult ovaries [ALL]
embargo expired
GBrowse tracks: submission_5300.sorted
GEO: GSM838769
GEO: GSM838803


2 files Download data files
modENCODE_5316


Related to: modENCODE_3207
modENCODE_5287

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage fat body uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_5316.sorted
GEO: GSM838784
GEO: GSM838785


2 files Download data files
modENCODE_5320


Related to: modENCODE_3207
modENCODE_5291

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5320.sorted
GEO: GSM838776
GEO: GSM838777


2 files Download data files
modENCODE_5313


Related to: modENCODE_3207
modENCODE_5284

Dm Tissue polyA Sites Expression RNA-seq third instar larvae CNS uniquely mapping reads Dmel r5 alignment Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired
GBrowse tracks: submission_5313.sorted
GEO: GSM838754
GEO: GSM838792


2 files Download data files
modENCODE_5319


Related to: modENCODE_3207
modENCODE_5290

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5319.sorted
GEO: GSM838758
GEO: GSM838801


2 files Download data files
modENCODE_5318


Related to: modENCODE_3207
modENCODE_5289

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage salivary glands uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: submission_5318.sorted
GEO: GSM838787
GEO: GSM838788


2 files Download data files
modENCODE_5323


Related to: modENCODE_3207
modENCODE_5294

Dm Tissue polyA Sites Expression RNA-seq WPP+2d fat uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_5323.sorted
GEO: GSM838756
GEO: GSM838798


2 files Download data files
modENCODE_5317


Related to: modENCODE_3207
modENCODE_5288

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage imaginal discs uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
imaginal discs [ALL]
embargo expired
GBrowse tracks: submission_5317.sorted
GEO: GSM838752
GEO: GSM838786


2 files Download data files
modENCODE_5302


Related to: modENCODE_3207
modENCODE_5273

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5302.sorted
GEO: GSM838746
GEO: GSM838780


2 files Download data files
modENCODE_5298


Related to: modENCODE_3207
modENCODE_5269

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 20 days heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5298.sorted
GEO: GSM838778
GEO: GSM838779


2 files Download data files
modENCODE_5303


Related to: modENCODE_3207
modENCODE_5274

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days accessory glands uniquely mapping reads Dmel r5 alignment adult male [ALL]
Oregon-R-modENCODE [ALL]
male accessory glands [ALL]
embargo expired
GBrowse tracks: submission_5303.sorted
GEO: GSM838748
GEO: GSM838772


2 files Download data files
modENCODE_5297


Related to: modENCODE_3207
modENCODE_5268

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5297.sorted
GEO: GSM838759
GEO: GSM838799


2 files Download data files
modENCODE_5304


Related to: modENCODE_3207
modENCODE_5275

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5304.sorted
GEO: GSM838765
GEO: GSM838766


2 files Download data files
modENCODE_5306


Related to: modENCODE_3207
modENCODE_5277

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 1 day carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_5306.sorted
GEO: GSM838750
GEO: GSM838762


2 files Download data files
modENCODE_5307


Related to: modENCODE_3207
modENCODE_5278

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 1 day digestive system uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired
GBrowse tracks: submission_5307.sorted
GEO: GSM838747
GEO: GSM838761


2 files Download data files
modENCODE_5308


Related to: modENCODE_3207
modENCODE_5279

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 20 days carcass uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired
GBrowse tracks: submission_5308.sorted
GEO: GSM838751
GEO: GSM838783


2 files Download data files
modENCODE_5301


Related to: modENCODE_3207
modENCODE_5272

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 1 day heads uniquely mapping reads Dmel r5 alignment adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5301.sorted
GEO: GSM838760
GEO: GSM838800


2 files Download data files
modENCODE_5324


Related to: modENCODE_3207
modENCODE_5295

Dm Tissue polyA Sites Expression RNA-seq WPP fat body uniquely mapping reads Dmel r5 alignment pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
GBrowse tracks: submission_5324.sorted
GEO: GSM838755
GEO: GSM838795


2 files Download data files
modENCODE_5321


Related to: modENCODE_3207
modENCODE_5292

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 4 days heads uniquely mapping reads Dmel r5 alignment virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired
GBrowse tracks: submission_5321.sorted
GEO: GSM838757
GEO: GSM838802


2 files Download data files
modENCODE_5322


Related to: modENCODE_3207
modENCODE_5293

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 4 days ovaries uniquely mapping reads Dmel r5 alignment virgin female [ALL]
Oregon-R-modENCODE [ALL]
virgin adult ovaries [ALL]
embargo expired
GBrowse tracks: submission_5322.sorted
GEO: GSM838767
GEO: GSM838768


2 files Download data files
modENCODE_5325


Related to: modENCODE_3207
modENCODE_5296

Dm Tissue polyA Sites Expression RNA-seq WPP salivary glands uniquely mapping reads Dmel r5 alignment L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired
GBrowse tracks: submission_5325.sorted
GEO: GSM838793
GEO: GSM838794


2 files Download data files