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Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq

experiment: Tissue-specific Poly(A) Site Profiling of D. melanogaster using Illumina poly(A)+ RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)-site enriched RNA from various tissues dissected from various stages of D. melanogaster. Total RNA was isolated by the Peter Cherbas group. Isolation of poly(A)+ RNA, strand-specific library construction, poly(A)-site enrichment and paired end (2X100, plus an index read) sequencing on an Illumina HiSeq 2000 were performed in the Brenton Graveley lab. Fastq files were generated using CASAVA.
There are 29 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_5268


Related to: modENCODE_3207
modENCODE_5297

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 1 day heads sequences adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384918
SRA: SRR384958
Download data files
modENCODE_5269


Related to: modENCODE_3207
modENCODE_5298

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 20 days heads sequences adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384937
SRA: SRR384938
Download data files
modENCODE_5290


Related to: modENCODE_3207
modENCODE_5319

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 1 day heads sequences virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384917
SRA: SRR384960
Download data files
modENCODE_5289


Related to: modENCODE_3207
modENCODE_5318

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage salivary glands sequences L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired SRA: SRR384946
SRA: SRR384947
Download data files
modENCODE_5288


Related to: modENCODE_3207
modENCODE_5317

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage imaginal discs sequences L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
imaginal discs [ALL]
embargo expired SRA: SRR384911
SRA: SRR384945
Download data files
modENCODE_5287


Related to: modENCODE_3207
modENCODE_5316

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage fat body sequences pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired SRA: SRR384943
SRA: SRR384944
Download data files
modENCODE_5286


Related to: modENCODE_3207
modENCODE_5315

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage digestive system sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired SRA: SRR384912
SRA: SRR384948
Download data files
modENCODE_5284


Related to: modENCODE_3207
modENCODE_5313

Dm Tissue polyA Sites Expression RNA-seq third instar larvae CNS sequences Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired SRA: SRR384913
SRA: SRR384951
Download data files
modENCODE_5285


Related to: modENCODE_3207
modENCODE_5314

Dm Tissue polyA Sites Expression RNA-seq third instar larvae wandering stage carcass sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired SRA: SRR384949
SRA: SRR384950
Download data files
modENCODE_5282


Related to: modENCODE_3207
modENCODE_5311

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 4 days digestive system sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired SRA: SRR384932
SRA: SRR384933
Download data files
modENCODE_5296


Related to: modENCODE_3207
modENCODE_5325

Dm Tissue polyA Sites Expression RNA-seq WPP salivary glands sequences L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
embargo expired SRA: SRR384952
SRA: SRR384953
Download data files
modENCODE_5295


Related to: modENCODE_3207
modENCODE_5324

Dm Tissue polyA Sites Expression RNA-seq WPP fat body sequences pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired SRA: SRR384914
SRA: SRR384954
Download data files
modENCODE_5294


Related to: modENCODE_3207
modENCODE_5323

Dm Tissue polyA Sites Expression RNA-seq WPP+2d fat sequences pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired SRA: SRR384915
SRA: SRR384957
Download data files
modENCODE_5293


Related to: modENCODE_3207
modENCODE_5322

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 4 days ovaries sequences virgin female [ALL]
Oregon-R-modENCODE [ALL]
virgin adult ovaries [ALL]
embargo expired SRA: SRR384926
SRA: SRR384927
Download data files
modENCODE_5292


Related to: modENCODE_3207
modENCODE_5321

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 4 days heads sequences virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384916
SRA: SRR384961
Download data files
modENCODE_5291


Related to: modENCODE_3207
modENCODE_5320

Dm Tissue polyA Sites Expression RNA-seq virgin female eclosion + 20 days heads sequences virgin female [ALL]
adult virgin female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384935
SRA: SRR384936
Download data files
modENCODE_5271


Related to: modENCODE_3207
modENCODE_5300

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 4 days ovaries sequences adult mated female [ALL]
Oregon-R-modENCODE [ALL]
mated adult ovaries [ALL]
embargo expired SRA: SRR384928
SRA: SRR384962
Download data files
modENCODE_5270


Related to: modENCODE_3207
modENCODE_5299

Dm Tissue polyA Sites Expression RNA-seq mated female eclosion + 4 days heads sequences adult mated female [ALL]
Adult virgin female eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384922
SRA: SRR384923
Download data files
modENCODE_5273


Related to: modENCODE_3207
modENCODE_5302

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 20 days heads sequences adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384905
SRA: SRR384939
Download data files
modENCODE_5272


Related to: modENCODE_3207
modENCODE_5301

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 1 day heads sequences adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384919
SRA: SRR384959
Download data files
modENCODE_5275


Related to: modENCODE_3207
modENCODE_5304

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days heads sequences adult male [ALL]
Adult male eclosion+1 day [ALL]
Oregon-R-modENCODE [ALL]
head [ALL]
embargo expired SRA: SRR384924
SRA: SRR384925
Download data files
modENCODE_5274


Related to: modENCODE_3207
modENCODE_5303

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days accessory glands sequences adult male [ALL]
Oregon-R-modENCODE [ALL]
male accessory glands [ALL]
embargo expired SRA: SRR384907
SRA: SRR384931
Download data files
modENCODE_5277


Related to: modENCODE_3207
modENCODE_5306

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 1 day carcass sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired SRA: SRR384909
SRA: SRR384921
Download data files
modENCODE_5276


Related to: modENCODE_3207
modENCODE_5305

Dm Tissue polyA Sites Expression RNA-seq mated male eclosion + 4 days testes sequences adult male [ALL]
Oregon-R-modENCODE [ALL]
testes [ALL]
embargo expired SRA: SRR384929
SRA: SRR384930
Download data files
modENCODE_5279


Related to: modENCODE_3207
modENCODE_5308

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 20 days carcass sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired SRA: SRR384910
SRA: SRR384942
Download data files
modENCODE_5278


Related to: modENCODE_3207
modENCODE_5307

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 1 day digestive system sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired SRA: SRR384906
SRA: SRR384920
Download data files
modENCODE_5281


Related to: modENCODE_3207
modENCODE_5310

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 4 days carcass sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
carcass [ALL]
embargo expired SRA: SRR384908
SRA: SRR384934
Download data files
modENCODE_5280


Related to: modENCODE_3207
modENCODE_5309

Dm Tissue polyA Sites Expression RNA-seq mixed males and females eclosion + 20 days digestive system sequences L3 stage wandering larvae [ALL]
adult [ALL]
Oregon-R-modENCODE [ALL]
digestive system [ALL]
embargo expired SRA: SRR384940
SRA: SRR384941
Download data files
modENCODE_5283


Related to: modENCODE_3207
modENCODE_5312

Dm Tissue polyA Sites Expression RNA-seq Pupae WPP+2d CNS sequences Pupae [ALL]
L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
central nervous system [ALL]
embargo expired SRA: SRR384955
SRA: SRR384956
Download data files