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Small RNA identification

experiment: Small RNA identification project: Small and microRNAs PI: Eric Lai Labs: Eric Lai, Gregory Hannon
We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes.
There are 71 RNA-seq submissions for this experiment:
DCC id Name developmental stage cell line strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_773

Dm y[1]; cn[1] bw[1] sp[1] Ovary smallRNA RNA-Seq Adult Female [ALL]
yellow cinnabar brown speck [ALL]
Adult ovaries [ALL]
embargo expired GEO: GSM280082


1 files Download data files
modENCODE_2376

Lai GSM399105 imaginal-disc Imaginal disc [ALL]
embargo expired GEO: GSM399105


1 files Download data files
modENCODE_774

Dm Loqs[f00791] Ovary smallRNA RNA-Seq Adult Female [ALL]
w[1118]; PBac{w[+mC]=WH}loqs[f00791]/CyO [ALL]
Adult ovaries [ALL]
embargo expired GEO: GSM280084


1 files Download data files
modENCODE_762

Dm Canton-S 1st Instar Larvae smallRNA RNA-Seq 1st instar larvae [ALL]
Canton-S [ALL]
embargo expired GEO: GSM360256
GEO: GSM360257


2 files Download data files
modENCODE_2379

Lai GSM280087 S2cells Ago2IP S2-DRSC [ALL]
embargo expired GEO: GSM280087


1 files Download data files
modENCODE_772

Dm Oregon-R Adult Male Testis smallRNA RNA-Seq Adult Male [ALL]
Oregon-R-modENCODE [ALL]
Adult testis [ALL]
embargo expired GEO: GSM280085


1 files Download data files
modENCODE_2380

Lai GSM280088 S2cells Ago1IP S2-DRSC [ALL]
embargo expired GEO: GSM280088


1 files Download data files
modENCODE_755

Dm Canton-S Embryo 0-1h smallRNA RNA-Seq Embryo 0-1 h [ALL]
embargo expired GEO: GSM286604
GEO: GSM286613


2 files Download data files
modENCODE_757

Dm Canton-S Pupae 2-4d smallRNA RNA-Seq 2-4 day old pupae [ALL]
Canton-S [ALL]
embargo expired GEO: GSM322219
GEO: GSM322338


2 files Download data files
modENCODE_750

Canton-S Adult Female Head smallRNA RNA-Seq Adult Female [ALL]
Canton-S [ALL]
Female Heads [ALL]
embargo expired GEO: GSM240749
GEO: GSM322533


2 files Download data files
modENCODE_2374

Kc167 Rubin smallRNA RNA-Seq Kc-GMR [ALL]
embargo expired GEO: GSM399110
GEO: GSM982081
SRA: SRR016855
SRA: SRR069831


2 files Download data files
modENCODE_752

Dm Canton-S Embryo 2-6h smallRNA RNA-Seq Embryo 2-6 h [ALL]
Canton-S [ALL]
embargo expired GEO: GSM286605
GEO: GSM286606


2 files Download data files
modENCODE_754

Dm Canton-S Embryo 6-10h smallRNA RNA-Seq Embryo 6-10 h [ALL]
Canton-S [ALL]
embargo expired GEO: GSM286607
GEO: GSM286611


2 files Download data files
modENCODE_2375

Lai GSM371638 S2-NP S2 [ALL]
embargo expired GEO: GSM371638


1 files Download data files
modENCODE_747

Dm Canton-S Adult Male Head smallRNA RNA-Seq Adult Male [ALL]
Canton-S [ALL]
Male heads [ALL]
embargo expired GEO: GSM286601
GEO: GSM322543


2 files Download data files
modENCODE_748

Dm Canton-S 3rd Instar Larvae smallRNA RNA-Seq 3rd instar larvae [ALL]
Canton-S [ALL]
embargo expired GEO: GSM322208
GEO: GSM322245


2 files Download data files
modENCODE_741

S2/Kc167 + Ecdysone exposure smallRNA RNA-Seq Kc167 [ALL]
S2-DRSC [ALL]
embargo expired GEO: GSM272651


1 files Download data files
modENCODE_526

Dm Dcr-2[L811fsX] Ovary smallRNA RNA-Seq Adult ovaries [ALL]
embargo expired GEO: GSM280083


1 files Download data files
modENCODE_4788

Lai OSCcell V144.M031 OSC [ALL]
embargo expired GEO: GSM915695
GEO: GSM915697
SRA: SRR488723
SRA: SRR514862


2 files Download data files
modENCODE_742

Dm Canton-S Imaginal Disk smallRNA RNA-Seq Imaginal disc [ALL]
embargo expired GEO: GSM275691


1 files Download data files
modENCODE_4771

Lai S3cell V074.V128 S3 [ALL]
embargo expired GEO: GSM915679
GEO: GSM915693
SRA: SRR488717
SRA: SRR488719


2 files Download data files
modENCODE_2742


Related to: modENCODE_574

Lai embryo 14-24hr Bs61-64-67-73 Embryo 14-16 h [ALL]
Embryo 16-18 h [ALL]
Embryo 18-20 h [ALL]
Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired GEO: GSM609229


1 files Download data files
modENCODE_2743


Related to: modENCODE_574

Lai embryo 2-6hr BS43-46 Embryo 2-4 h [ALL]
Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired GEO: GSM609238


1 files Download data files
modENCODE_4785

Lai CME L1cell V126 CME L1 [ALL]
embargo expired GEO: GSM915694


1 files Download data files
modENCODE_4787

Lai S1cell V146 S1 [ALL]
embargo expired GEO: GSM915696


1 files Download data files
modENCODE_4780

Lai fGS OSScell V091 fGS/OSS [ALL]
embargo expired GEO: GSM915680


1 files Download data files
modENCODE_2008


Related to: modENCODE_574

Lai one day adult male-ENCODE/BS149 Adult male eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired GEO: GSM609223


1 files Download data files
modENCODE_4782

Lai G2cell V127 G2 [ALL]
embargo expired GEO: GSM915681


1 files Download data files
modENCODE_2009


Related to: modENCODE_574

Lai one day adult female-ENCODE/BS152 Adult virgin female eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired GEO: GSM609224


1 files Download data files
modENCODE_3195

Lai Female Head Aged V013 Adult Female [ALL]
Canton-S [ALL]
Female Heads [ALL]
embargo expired GEO: GSM609251


1 files Download data files
modENCODE_3318

Lai DTT-4h S2-HDR [ALL]
embargo expired

1 files Download data files
modENCODE_3314

Lai r2d2 ovary totalRNA v2 Adult ovaries [ALL]
embargo expired GEO: GSM609232
GEO: GSM628271


2 files Download data files
modENCODE_3315

Lai Ago2-414 ovary v2 Adult ovaries [ALL]
embargo expired GEO: GSM609237
GEO: GSM628272


2 files Download data files
modENCODE_2973

Lai S2 Rubin Ecdysone S2-DRSC [ALL]
embargo expired GEO: GSE24542
GEO: GSE24543


2 files Download data files
modENCODE_2972

Lai CantonS Embryo Irradiated 2-18hr Embryo [ALL]
w[1118] [ALL]
embargo expired GEO: GSE24541


1 files Download data files
modENCODE_2976

Lai CantonS ovary Adult ovaries [ALL]
embargo expired GEO: GSE24545


1 files Download data files
modENCODE_3190

Lai Female Head HeatShocked V007 Adult Female [ALL]
Canton-S [ALL]
Female Heads [ALL]
embargo expired GEO: GSM609247


1 files Download data files
modENCODE_2820


Related to: modENCODE_555

Lai CMEL1 BS28 CME L1 [ALL]
embargo expired GEO: GSM609235


1 files Download data files
modENCODE_2974

Lai Kc Rubin Ecdysone Kc-GMR [ALL]
embargo expired GEO: GSE24543
GEO: GSE24544


2 files Download data files
modENCODE_2975

Lai Dcr-2 L811fsX ovary Adult ovaries [ALL]
embargo expired GEO: GSE24544


1 files Download data files
modENCODE_3506


Related to: modENCODE_555

Lai Sg4 Sg4 [ALL]
embargo expired GEO: GSM609218
GEO: GSM980232


2 files Download data files
modENCODE_2721


Related to: modENCODE_555

Lai CMEW1 Cl 8 CME W1 Cl.8+ [ALL]
embargo expired GEO: GSM609226
GEO: GSM609227


2 files Download data files
modENCODE_2749

Lai r2d2 ovary Ago1IP Adult ovaries [ALL]
embargo expired GEO: GSM609233


1 files Download data files
modENCODE_2751

Lai CantonS male Adult Male [ALL]
Canton-S [ALL]
Male body [ALL]
embargo expired GEO: GSM286602
GEO: GSM399107
GEO: GSM609234


3 files Download data files
modENCODE_2746

Lai Ago2-414 ovary Ago1IP Adult ovaries [ALL]
embargo expired GEO: GSM609231


1 files Download data files
modENCODE_2833

Lai Dcr-2 L811fsX ovary Ago1IP Adult ovaries [ALL]
embargo expired GEO: GSM609236


1 files Download data files
modENCODE_2971

Lai CantonS Embryo Non-irradiated 2-18hr Embryo [ALL]
w[1118] [ALL]
embargo expired GEO: GSE24540


1 files Download data files
modENCODE_2608

Lai S2R+ 2rep S2R+ [ALL]
embargo expired GEO: GSM343832
GEO: GSM343833


2 files Download data files
modENCODE_2725

Lai S2DRSC Rubin S2-GMR [ALL]
embargo expired GEO: GSM272652
GEO: GSM361908
SRA: SRR013618
SRA: SRR069830


2 files Download data files
modENCODE_2605

Lai OvarySomaticSheet smallRNA 4replicates Ovary Somatic Sheet [ALL]
embargo expired GEO: GSM385744
GEO: GSM385748
GEO: GSM385821
GEO: GSM385822


4 files Download data files
modENCODE_2606

Lai Kc167 2rep Kc167 [ALL]
embargo expired GEO: GSM399100
GEO: GSM399101


2 files Download data files
modENCODE_2556

Lai GSM360262 0-2day pupae 0-2 day old pupae [ALL]
embargo expired GEO: GSM360262


1 files Download data files
modENCODE_2744

Lai CantonS ovary Ago1IP Adult ovaries [ALL]
embargo expired GEO: GSM609230


1 files Download data files
modENCODE_2741

Dm Canton-S Embryo 12-24h smallRNA RNA-Seq Embryo 12-24 h [ALL]
Canton-S [ALL]
embargo expired GEO: GSM364902


1 files Download data files
modENCODE_3310


Related to: modENCODE_555

Lai ML-DmD20c5 ML-DmD20-c5 [ALL]
embargo expired GEO: GSM919260
GEO: GSM919261


2 files Download data files
modENCODE_3311


Related to: modENCODE_555

Lai S1 V032 S1 [ALL]
embargo expired GEO: GSM919262


1 files Download data files
modENCODE_3508


Related to: modENCODE_555

2007 retrofit Lai ML-DmBG1-c1 [ALL]
embargo expired GEO: GSM609222
GEO: GSM980233


2 files Download data files
modENCODE_2543

Lai GSM360260 0 1day pupae 0-1 day old pupae [ALL]
embargo expired GEO: GSM360260


1 files Download data files
modENCODE_3510


Related to: modENCODE_555

Lai ML-DmBG3-C2 ML-DmBG3-c2 [ALL]
embargo expired GEO: GSM609225
GEO: GSM980234


2 files Download data files
modENCODE_3309


Related to: modENCODE_555

Lai ML-DmD16c3 V034 ML-DmD16-c3 [ALL]
embargo expired GEO: GSM919259


1 files Download data files
modENCODE_3511


Related to: modENCODE_555

Lai S2-DRSC S2-DRSC [ALL]
embargo expired GEO: GSM609228
GEO: GSM980235


2 files Download data files
modENCODE_3193


Related to: modENCODE_555

Lai MLDmD21 V027 ML-DmD21 [ALL]
embargo expired GEO: GSM609220
GEO: GSM609249
SRA: SRR069256
SRA: SRR069507


2 files Download data files
modENCODE_2381

Lai GSM280086 adult ovaries AGO2IP embargo expired GEO: GSM280086


1 files Download data files
modENCODE_3307


Related to: modENCODE_555

Lai GM2 GM2 [ALL]
embargo expired GEO: GSM609219
GEO: GSM930140


2 files Download data files
modENCODE_3514


Related to: modENCODE_555

Lai MLDmD32 ML-DmD32 [ALL]
embargo expired GEO: GSM609250


3 files Download data files
modENCODE_3741


Related to: modENCODE_555

Lai mbn2 mbn2 [ALL]
embargo expired GEO: GSM919266
GEO: GSM919267


2 files Download data files
modENCODE_3512


Related to: modENCODE_555

Lai MLDmD9 ML-DmD9 [ALL]
embargo expired GEO: GSM609248
GEO: GSM980236


2 files Download data files
modENCODE_3513


Related to: modENCODE_555

Lai MLDmD8 ML-DmD8 [ALL]
embargo expired GEO: GSM919264
GEO: GSM919265


2 files Download data files
modENCODE_2555

Lai Canton-S Female Body Adult Female [ALL]
Canton-S [ALL]
embargo expired GEO: GSM286603
GEO: GSM399106
SRA: SRR018039
SRA: SRR069837


2 files Download data files
modENCODE_3742


Related to: modENCODE_555

Lai 1182-4H 1182-4H [ALL]
embargo expired GEO: GSM609221
GEO: GSM980238


2 files Download data files
modENCODE_3743


Related to: modENCODE_555

Lai CMEW2 CME W2 [ALL]
embargo expired GEO: GSM919268
GEO: GSM919269


2 files Download data files