modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Reanalysis of comprehensive set of C. elegans transcripts and expression for various stages and conditions

experiment: Reanalysis of comprehensive set of C. elegans transcripts and expression for various stages and conditions project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.

All features generated by this experiment:
Feature Export
TSS 97556
This represents 32590 unique TSSs
TAB CSV GFF3 (for UCSC) SEQ
Exon 1949013 Expression Levels 1949013
This represents 819996 unique Exons
TAB CSV GFF3 (for UCSC) SEQ
OverlappingESTSet 160694 TAB CSV GFF3 SEQ
SL1AcceptorSite 152720
This represents 24954 unique SL1AcceptorSites
TAB CSV GFF3 (for UCSC) SEQ
Transcript 653075 Expression Levels 653075 TAB CSV GFF3 SEQ
Intron 1393290
This represents 169618 unique Introns
TAB CSV GFF3 (for UCSC) SEQ
PolyASite 136181
This represents 42987 unique PolyASites
TAB CSV GFF3 (for UCSC) SEQ
TranscriptionEndSite 63138
This represents 47341 unique TranscriptionEndSites
TAB CSV GFF3 (for UCSC) SEQ
SL2AcceptorSite 44908
This represents 8734 unique SL2AcceptorSites
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All 95 tracks I II III IV V X
There are 19 Computational annotation and Computation annotation submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_2955

RNAseq - mid-L1 20dC 4hrs post-L1 genelets revised 100320 larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
TSS: 8860   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 111868   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  111868   export: TAB   CSV
OverlappingESTSet: 10970   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 35568   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35568   export: TAB   CSV
SL1AcceptorSite: 7754   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 82763   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 12471   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 3346   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2110   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L1
rainbow_transcript_L1
Hillier_confirmed_introns_L1
Hillier_confirmed_polyA_L1
Hillier_confirmed_SL_L1


3 files Download data files
modENCODE_2957

RNAseq - mid-L3 25dC 26.75hrs post-L1 genelets revised 100320 mid-L3 stage larvae [ALL]
N2 [ALL]
embargo expired
TSS: 7531   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 105890   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  105890   export: TAB   CSV
OverlappingESTSet: 13961   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 6852   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 34216   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  34216   export: TAB   CSV
Intron: 75965   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 12972   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 6430   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1921   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L3
rainbow_transcript_L3
Hillier_confirmed_introns_L3
Hillier_confirmed_polyA_L3
Hillier_confirmed_SL_L3
Hillier_confirmed_SL_DAUD2ENTR


3 files Download data files
modENCODE_2956

RNAseq - mid-L2 25dC 17.75hrs post-L1 genelets revised 100320 mid-L2 stage larvae [ALL]
N2 [ALL]
embargo expired
TSS: 8160   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 103996   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  103996   export: TAB   CSV
OverlappingESTSet: 17420   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 7214   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 32027   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  32027   export: TAB   CSV
PolyASite: 11512   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 76873   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 9260   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 2098   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L2
rainbow_transcript_L2
Hillier_confirmed_introns_L2
Hillier_confirmed_polyA_L2
Hillier_confirmed_SL_L2


3 files Download data files
modENCODE_2959

RNAseq - male mid-L4 dpy28(y1);him-8(e1489) 25dC 30hrs post-L1 genelets revised 100320 mid-L4 stage larvae [ALL]
Male larva mid-L4 25dC 30 hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
TSS: 2747   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 111733   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  111733   export: TAB   CSV
OverlappingESTSet: 4352   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 7790   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 33572   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  33572   export: TAB   CSV
Intron: 82809   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 19   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 1605   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1763   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L4DPY28
rainbow_transcript_L4DPY28
Hillier_confirmed_introns_L4DPY28
Hillier_confirmed_polyA_L4DPY28
Hillier_confirmed_SL_L4DPY28


3 files Download data files
modENCODE_2958

RNAseq - mid-L4 25dC 34.25hrs post-L1 genelets revised 100320 mid-L4 stage larvae [ALL]
N2 [ALL]
embargo expired
TSS: 6387   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 103087   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  103087   export: TAB   CSV
OverlappingESTSet: 11935   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 5280   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 34471   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  34471   export: TAB   CSV
Intron: 71817   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 10377   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1668   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 5548   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L4
rainbow_transcript_L4
Hillier_confirmed_introns_L4
Hillier_confirmed_polyA_L4
Hillier_confirmed_SL_L4


3 files Download data files
modENCODE_2961

RNAseq - Adult Harposporium control EcoliOP50 exposed 2 24hrs genelets revised 100320 mid-L4 stage larvae [ALL]
Adult Harposporium control EcoliOP50 exposed 2 24hrs [ALL]
N2 [ALL]
embargo expired
TSS: 4467   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 97124   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  97124   export: TAB   CSV
OverlappingESTSet: 10466   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 34366   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  34366   export: TAB   CSV
SL1AcceptorSite: 9398   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 68598   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 4279   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 3178   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 5999   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_ADCONTR2_24HR
rainbow_transcript_ADCONTR2_24HR
Hillier_confirmed_introns_ADCONTR2_24HR
Hillier_confirmed_polyA_ADCONTR2_24HR
Hillier_confirmed_SL_ADCONTR2_24HR


3 files Download data files
modENCODE_2960

RNAseq - Young Adult 25dC 46hrs post-L1 genelets revised 100320 mid-L4 stage larvae [ALL]
Young Adult [ALL]
N2 [ALL]
embargo expired
TSS: 8128   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 103308   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  103308   export: TAB   CSV
OverlappingESTSet: 14636   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 7127   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 33999   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  33999   export: TAB   CSV
PolyASite: 11551   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 73423   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 6508   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 2516   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_YA
rainbow_transcript_YA
Hillier_confirmed_introns_YA
Hillier_confirmed_polyA_YA
Hillier_confirmed_SL_YA


3 files Download data files
modENCODE_2962

RNAseq - Adult Harposporium exposed 2 24hrs genelets revised 100320 mid-L4 stage larvae [ALL]
Adult Harposporium exposed 2 24hrs [ALL]
N2 [ALL]
embargo expired
TSS: 4909   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 105044   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  105044   export: TAB   CSV
OverlappingESTSet: 7445   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 38099   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  38099   export: TAB   CSV
SL1AcceptorSite: 10136   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 6692   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 73394   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2536   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 3553   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_ADHARP2_24HR
rainbow_transcript_ADHARP2_24HR
Hillier_confirmed_introns_ADHARP2_24HR
Hillier_confirmed_polyA_ADHARP2_24HR
Hillier_confirmed_SL_ADHARP2_24HR


3 files Download data files
modENCODE_2963

RNAseq - Adult S macescens Db10 control EcoliOP50 exposed 1 24hrs genelets revised 100320 mid-L4 stage larvae [ALL]
Adult S macescens Db10 control EcoliOP50 exposed 1 24hrs [ALL]
N2 [ALL]
embargo expired
TSS: 5092   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 102733   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  102733   export: TAB   CSV
OverlappingESTSet: 7471   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 35707   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35707   export: TAB   CSV
SL1AcceptorSite: 10595   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 73586   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 5739   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2379   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 3173   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_ADDB10CONR1_24HR
rainbow_transcript_ADDB10CONR1_24HR
Hillier_confirmed_introns_ADDB10CONR1_24HR
Hillier_confirmed_polyA_ADDB10CONR1_24HR
Hillier_confirmed_SL_ADDB10CONR1_24HR


3 files Download data files
modENCODE_2948

RNAseq - dauer daf-2 25dC 91hrs post-L1 genelets revised 100320 dauer exit daf-2(e1370) 25dC 91hrs 15dC 12hrs [ALL]
CB1370 [ALL]
embargo expired
TSS: 3590   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 98761   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  98761   export: TAB   CSV
OverlappingESTSet: 5895   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 32829   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  32829   export: TAB   CSV
SL1AcceptorSite: 7740   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 70876   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 4778   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2305   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1629   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_DAUD2
rainbow_transcript_DAUD2
Hillier_confirmed_introns_DAUD2
Hillier_confirmed_polyA_DAUD2
Hillier_confirmed_SL_DAUD2


3 files Download data files
modENCODE_2965

RNAseq - L4 soma JK1107 no DNaseI genelets revised 100320 L4 soma JK1107 no DNaseI [ALL]
JK1107 [ALL]
embargo expired
TSS: 4477   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 99072   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  99072   export: TAB   CSV
OverlappingESTSet: 6873   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 35062   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35062   export: TAB   CSV
SL1AcceptorSite: 8868   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 68654   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 432   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2396   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 2207   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L4JK1107_NODNASE
rainbow_transcript_L4JK1107_NODNASE
Hillier_confirmed_introns_L4JK1107_NODNASE
Hillier_confirmed_polyA_L4JK1107_NODNASE
Hillier_confirmed_SL_L4JK1107_NODNASE


3 files Download data files
modENCODE_2964

RNAseq - Adult S macescens Db10 exposed 1 24hrs genelets revised 100320 mid-L4 stage larvae [ALL]
Adult S macescens Db10 exposed 1 24hrs [ALL]
N2 [ALL]
embargo expired
TSS: 3573   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 102502   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  102502   export: TAB   CSV
OverlappingESTSet: 4590   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 35054   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35054   export: TAB   CSV
SL1AcceptorSite: 9547   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 72902   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 5576   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 3059   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 1017   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_ADDB10EXP1_24HR
rainbow_transcript_ADDB10EXP1_24HR
Hillier_confirmed_introns_ADDB10EXP1_24HR
Hillier_confirmed_polyA_ADDB10EXP1_24HR
Hillier_confirmed_SL_ADDB10EXP1_24HR


3 files Download data files
modENCODE_2949

RNAseq - dauer entry daf-2 25dC 48hrs post-L1 genelets revised 100320 dauer entry daf-2(el370) 25dC 48 hrs post-L1 stage larvae [ALL]
CB1370 [ALL]
embargo expired
TSS: 4155   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 102276   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  102276   export: TAB   CSV
OverlappingESTSet: 8317   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 8105   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 33025   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  33025   export: TAB   CSV
Intron: 74481   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 4157   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 4162   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1701   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_DAUD2ENTR
rainbow_transcript_DAUD2ENTR
Hillier_confirmed_introns_DAUD2ENTR
Hillier_confirmed_polyA_DAUD2ENTR


3 files Download data files
modENCODE_2950

RNAseq - dauer exit daf-2 25dC 91hrs 15dC 12hrs post-L1 genelets revised 100320 dauer exit daf-2(e1370) 25dC 91hrs 15dC 12hrs [ALL]
CB1370 [ALL]
embargo expired
TSS: 1550   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 78639   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  78639   export: TAB   CSV
OverlappingESTSet: 2126   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 4658   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 31600   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  31600   export: TAB   CSV
PolyASite: 3017   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 49269   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 576   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1225   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_DAUD2EXT
rainbow_transcript_DAUD2EXT
Hillier_confirmed_introns_DAUD2EXT
Hillier_confirmed_polyA_DAUD2EXT
Hillier_confirmed_SL_DAUD2EXT


3 files Download data files
modENCODE_2951

RNAseq - early embryo genelets revised 100320 early Embryo [ALL]
N2 [ALL]
embargo expired
TSS: 1456   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 108500   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  108500   export: TAB   CSV
OverlappingESTSet: 2046   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 8233   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 35097   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35097   export: TAB   CSV
Intron: 79668   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 12060   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1912   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 590   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_EE
rainbow_transcript_EE
Hillier_confirmed_introns_EE
Hillier_confirmed_polyA_EE
Hillier_confirmed_SL_EE


3 files Download data files
modENCODE_2952

RNAseq - embryo him-8 20dC post-L1 genelets revised 100320 Embryo him-8(e1480) 20dC [ALL]
CB1489 [ALL]
embargo expired
TSS: 5487   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 93980   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  93980   export: TAB   CSV
OverlappingESTSet: 8121   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 7433   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 31995   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  31995   export: TAB   CSV
Intron: 66259   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 4450   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 2634   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1981   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_EHIM8
rainbow_transcript_EHIM8
Hillier_confirmed_introns_EHIM8
Hillier_confirmed_polyA_EHIM8
Hillier_confirmed_SL_EHIM8


3 files Download data files
modENCODE_2947

RNAseq - Adult spe-9 23dC 8days post-L4 molt genelets revised 100320 7-10 days post-L4 adult hermaphrodite [ALL]
N2 [ALL]
embargo expired
TSS: 9215   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 101904   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  101904   export: TAB   CSV
OverlappingESTSet: 14541   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 9735   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 35380   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  35380   export: TAB   CSV
PolyASite: 5685   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 72921   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 5326   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 4050   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_SPE9A
rainbow_transcript_SPE9A
Hillier_confirmed_introns_SPE9A
Hillier_confirmed_polyA_SPE9A
Hillier_confirmed_SL_SPE9A


3 files Download data files
modENCODE_2953

RNAseq - late embryo 20dC 4.5hrs post-early embryo genelets revised 100320 late Embryo 20dC 4.5 hours post-early embryo [ALL]
N2 [ALL]
embargo expired
TSS: 2145   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 115460   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  115460   export: TAB   CSV
OverlappingESTSet: 3124   export: TAB   CSV GFF3 SEQ    create LIST
Transcript: 38259   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  38259   export: TAB   CSV
SL1AcceptorSite: 8139   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 83810   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
PolyASite: 12418   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 979   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 1888   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_LE
rainbow_transcript_LE
Hillier_confirmed_introns_LE
Hillier_confirmed_polyA_LE
Hillier_confirmed_SL_LE


3 files Download data files
modENCODE_2954

RNAseq - lin-35(n745) mid-L1 25dC 4.0hrs post-L1 genelets revised 100320 lin-35(n745) larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
MT10430 [ALL]
embargo expired
TSS: 5627   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Exon: 103136   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  103136   export: TAB   CSV
OverlappingESTSet: 6405   export: TAB   CSV GFF3 SEQ    create LIST
SL1AcceptorSite: 8116   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Transcript: 32749   export: TAB   CSV GFF3 SEQ    create LIST
Expression Levels:  32749   export: TAB   CSV
PolyASite: 7996   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Intron: 75222   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
TranscriptionEndSite: 778   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SL2AcceptorSite: 2040   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: rainbow_genelet_L1LIN35
rainbow_transcript_L1LIN35
Hillier_confirmed_introns_L1LIN35
Hillier_confirmed_polyA_L1LIN35
Hillier_confirmed_SL_L1LIN35


3 files Download data files