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RNAi of RNA splicing factors in D. melanogaster

experiment: RNAi of RNA splicing factors in D. melanogaster project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
The goal of these experiments are to identify splicing events that are regulated by specific RNA binding proteins in Drosophila S2 cells. From this collection of regulated exons, we will identify motifs that are enriched in and/or around the regulated exons and are therefore the best candidates for being recognized by the RNA binding protein. To do this, we are using RNAi to deplete individual RNA binding protein mRNAs from Drosophila S2-DRSC cells and then using RNA-Seq to characterize the resulting transcriptome. Comparison of the transcriptome from depleted cells to that of un-depleted cells will allow us to identify regulated splicing events.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 60 RNA-seq, RNAi submissions for this experiment:
DCC id Name RNAi reagent cell line Embargoed until Features, GBrowse and Data Files
modENCODE_3120

S2-DRSC-CG7971-RNAi S2-DRSC_CG7971 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG7971.sub_3120.merged
GEO: GSM461200
GEO: GSM627402
SRA: SRR031764
SRA: SRR031765
SRA: SRR074523
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3119

S2-DRSC-CG8019-RNAi S2-DRSC_CG8019 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8019.sub_3119.merged
GEO: GSM627403
GEO: GSM627404
SRA: SRR074525
SRA: SRR074526


2 files Download data files
modENCODE_3118

S2-DRSC-CG11266-RNAi S2-DRSC_CG11266 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG11266.sub_3118.merged
GEO: GSM627346
GEO: GSM627347
SRA: SRR074447
SRA: SRR074448


2 files Download data files
modENCODE_3117

S2-DRSC-CG30122-RNAi S2-DRSC_CG30122 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG30122.sub_3117.merged
GEO: GSM461191
GEO: GSM627362
SRA: SRR031746
SRA: SRR031747
SRA: SRR074470
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3116

S2-DRSC-CG31716-RNAi S2-DRSC_CG31716 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG31716.sub_3116.merged
GEO: GSM627364
GEO: GSM627369
SRA: SRR074474
SRA: SRR074480


2 files Download data files
modENCODE_910

RNAi CG8144 S2-DRSC RNA-Seq Bowtie S2-DRSC_CG8144 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8144.sub_910.merged
GEO: GSM461179
GEO: GSM461180
GEO: GSM461181
SRA: SRR031718
SRA: SRR031719
...All entries in public repositories generated by this submission



3 files Download data files
modENCODE_3115

S2-DRSC-CG3312-RNAi S2-DRSC_CG3312 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG3312.sub_3115.merged
GEO: GSM627370
GEO: GSM627371
SRA: SRR074481
SRA: SRR074482


2 files Download data files
modENCODE_3114

S2-DRSC-CG6049-RNAi S2-DRSC_CG6049 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6049.sub_3114.merged
GEO: GSM627392
GEO: GSM627393
SRA: SRR074511
SRA: SRR074512


2 files Download data files
modENCODE_3113

S2-DRSC-CG10279-RNAi S2-DRSC_CG10279 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10279.sub_3113.merged
GEO: GSM627337
GEO: GSM627338
SRA: SRR074434
SRA: SRR074435
SRA: SRR074436
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3112

S2-DRSC-CG13425-RNAi S2-DRSC_CG13425 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG13425.sub_3112.merged
GEO: GSM461190
GEO: GSM627349
SRA: SRR031744
SRA: SRR031745
SRA: SRR074420
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3111

S2-DRSC-CG16901-RNAi S2-DRSC_CG16901 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG16901.sub_3111.merged
GEO: GSM461189
GEO: GSM627355
SRA: SRR031742
SRA: SRR031743
SRA: SRR074459


3 files Download data files
modENCODE_3109

S2-DRSC-CG8912-RNAi S2-DRSC_CG8912 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8912.sub_3109.merged
GEO: GSM627413
GEO: GSM627414
SRA: SRR074538
SRA: SRR074539
SRA: SRR074540
...All entries in public repositories generated by this submission



6 files Download data files
modENCODE_3110

S2-DRSC-CG8241-RNAi S2-DRSC_CG8241 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8241.sub_3110.merged
GEO: GSM627405
GEO: GSM627406
SRA: SRR074527
SRA: SRR074528


2 files Download data files
modENCODE_3108

S2-DRSC-CG5422-RNAi S2-DRSC_CG5422 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5422.sub_3108.merged
GEO: GSM461197
GEO: GSM627386
SRA: SRR074422
SRA: SRR074423
SRA: SRR074499


3 files Download data files
modENCODE_3107

S2-DRSC-CG6203-RNAi S2-DRSC_CG6203 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6203.sub_3107.merged
GEO: GSM627380
GEO: GSM627394
SRA: SRR074492
SRA: SRR074513


2 files Download data files
modENCODE_3105

S2-DRSC-CG4602-RNAi S2-DRSC_CG4602 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG4602.sub_3105.merged
GEO: GSM461192
GEO: GSM627376
SRA: SRR031748
SRA: SRR031749
SRA: SRR074487
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3106

S2-DRSC-CG6841-RNAi S2-DRSC_CG6841 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6841.sub_3106.merged
GEO: GSM627398
GEO: GSM627399
SRA: SRR074517
SRA: SRR074518


2 files Download data files
modENCODE_3104

S2-DRSC-CG5170-RNAi S2-DRSC_CG5170 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5170.sub_3104.merged
GEO: GSM627384
GEO: GSM627385
SRA: SRR074497
SRA: SRR074498


2 files Download data files
modENCODE_3144

S2-DRSC-CG5836-RNAi S2-DRSC_CG5836 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5836.sub_3144.merged
GEO: GSM461206
GEO: GSM627391
SRA: SRR031776
SRA: SRR031777
SRA: SRR074509
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3143

S2-DRSC-CG7878-RNAi S2-DRSC_CG7878 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG7878.sub_3143.merged
GEO: GSM461209
GEO: GSM461210
SRA: SRR031781
SRA: SRR031782
SRA: SRR031783
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3103

S2-DRSC-CG5821-RNAi S2-DRSC_CG5821 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5821.sub_3103.merged
GEO: GSM461205
GEO: GSM627390
SRA: SRR031774
SRA: SRR031775
SRA: SRR074507
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3101

S2-DRSC-CG10203-RNAi S2-DRSC_CG10203 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10203.sub_3101.merged
GEO: GSM461195
GEO: GSM627336
SRA: SRR031754
SRA: SRR031755
SRA: SRR074433


3 files Download data files
modENCODE_3102

S2-DRSC-CG8749-RNAi S2-DRSC_CG8749 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8749.sub_3102.merged
GEO: GSM627409
GEO: GSM627410
SRA: SRR074532
SRA: SRR074533


2 files Download data files
modENCODE_3145

S2-DRSC-CG3249-RNAi S2-DRSC_CG3249 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG3249.sub_3145.merged
GEO: GSM461207
GEO: GSM461208
SRA: SRR031778
SRA: SRR031779
SRA: SRR031780
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3100

S2-DRSC-CG1101-RNAi S2-DRSC_CG1101 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG1101.sub_3100.merged
GEO: GSM627344
GEO: GSM627345
SRA: SRR074445
SRA: SRR074446


2 files Download data files
modENCODE_3146

S2-DRSC-CG10328-RNAi S2-DRSC_CG10328 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10328.sub_3146.merged
GEO: GSM627339
GEO: GSM627340
SRA: SRR074439
SRA: SRR074440


2 files Download data files
modENCODE_3138

S2-DRSC-Untreated-RNAi S2-DRSC Untreated [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: Untreated.sub_3138.merged
GEO: GSM461182
GEO: GSM627333
GEO: GSM627334
SRA: SRR031728
SRA: SRR031729
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3098

S2-DRSC-CG32423-RNAi S2-DRSC_CG32423 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG32423.sub_3098.merged
GEO: GSM627366
GEO: GSM627367
SRA: SRR074476
SRA: SRR074477
SRA: SRR074478


3 files Download data files
modENCODE_3097

S2-DRSC-CG33106-RNAi S2-DRSC_CG33106 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG33106.sub_3097.merged
GEO: GSM627365
GEO: GSM627368
SRA: SRR074475
SRA: SRR074479


2 files Download data files
modENCODE_3137

S2-DRSC-CG17136-RNAi S2-DRSC_CG17136 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG17136.sub_3137.merged
GEO: GSM461196
GEO: GSM627356
SRA: SRR031756
SRA: SRR031757
SRA: SRR074460
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3099

S2-DRSC-CG17838-RNAi S2-DRSC_CG17838 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG17838.sub_3099.merged
GEO: GSM461188
GEO: GSM627357
SRA: SRR031740
SRA: SRR031741
SRA: SRR074462


3 files Download data files
modENCODE_3139

S2-DRSC-CG4878-RNAi S2-DRSC_CG4878 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG4878.sub_3139.merged
GEO: GSM627381
GEO: GSM627382
SRA: SRR074493
SRA: SRR074494


2 files Download data files
modENCODE_3095

S2-DRSC-CG6227-RNAi S2-DRSC_CG6227 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6227.sub_3095.merged
GEO: GSM627396
GEO: GSM627397
SRA: SRR074515
SRA: SRR074516


3 files Download data files
modENCODE_3140

S2-DRSC-CG4262-RNAi S2-DRSC_CG4262 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG4262.sub_3140.merged
GEO: GSM627374
GEO: GSM627375
SRA: SRR074485
SRA: SRR074486


2 files Download data files
modENCODE_3142

S2-DRSC-CG12749-RNAi S2-DRSC_CG12749 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG12749.sub_3142.merged
GEO: GSM461187
GEO: GSM627348
SRA: SRR031738
SRA: SRR031739
SRA: SRR074449
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3141

S2-DRSC-CG18426-RNAi S2-DRSC_CG18426 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG18426.sub_3141.merged
GEO: GSM461199
GEO: GSM627360
SRA: SRR031762
SRA: SRR031763
SRA: SRR074467
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3096

S2-DRSC-CG5655-RNAi S2-DRSC_CG5655 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5655.sub_3096.merged
GEO: GSM461193
GEO: GSM627389
SRA: SRR031750
SRA: SRR031751
SRA: SRR074421
...All entries in public repositories generated by this submission



6 files Download data files
modENCODE_3633

RNAi Untreated-1 S2-DRSC RNA-Seq Bowtie S2-DRSC Untreated [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: S2_DRSC_Untreated.SAM.bam.sorted
GEO: GSM461176
GEO: GSM461177
GEO: GSM461178
SRA: SRR031708
SRA: SRR031709
...All entries in public repositories generated by this submission



3 files Download data files
modENCODE_3092

S2-DRSC-CG8636-RNAi S2-DRSC_CG8636 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8636.sub_3092.merged
GEO: GSM627407
GEO: GSM627408
SRA: SRR074529
SRA: SRR074530
SRA: SRR074531


3 files Download data files
modENCODE_3132

S2-DRSC-CG6946-RNAi S2-DRSC_CG6946 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6946.sub_3132.merged
GEO: GSM461183
GEO: GSM627400
SRA: SRR031730
SRA: SRR031731
SRA: SRR074519
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3094

S2-DRSC-CG6779-RNAi S2-DRSC_CG6779 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG6779.sub_3094.merged


2 files Download data files
modENCODE_3134

S2-DRSC-CG9983-RNAi S2-DRSC_CG9983 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG9983.sub_3134.merged
GEO: GSM461186
GEO: GSM627418
SRA: SRR031736
SRA: SRR031737
SRA: SRR074549
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3133

S2-DRSC-CG1987-RNAi S2-DRSC_CG1987 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG1987.sub_3133.merged
GEO: GSM461194
GEO: GSM627361
SRA: SRR031752
SRA: SRR031753
SRA: SRR074469


3 files Download data files
modENCODE_3093

S2-DRSC-CG7437-RNAi S2-DRSC_CG7437 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG7437.sub_3093.merged
GEO: GSM461203
GEO: GSM627401
SRA: SRR031770
SRA: SRR031771
SRA: SRR074521
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3090

S2-DRSC-CG9373-RNAi S2-DRSC_CG9373 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG9373.sub_3090.merged
GEO: GSM461184
GEO: GSM627415
SRA: SRR031732
SRA: SRR031733
SRA: SRR074544
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3135

S2-DRSC-CG5442-RNAi S2-DRSC_CG5442 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5442.sub_3135.merged
GEO: GSM627387
GEO: GSM627388
SRA: SRR074500
SRA: SRR074501
SRA: SRR074502
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3091

S2-DRSC-CG8781-RNAi S2-DRSC_CG8781 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG8781.sub_3091.merged
GEO: GSM627411
GEO: GSM627412
SRA: SRR074534
SRA: SRR074535
SRA: SRR074536
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3136

S2-DRSC-CG31000-RNAi S2-DRSC_CG31000 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG31000.sub_3136.merged
GEO: GSM461202
GEO: GSM627363
SRA: SRR031768
SRA: SRR031769
SRA: SRR074472
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3089

S2-DRSC-CG10128-RNAi S2-DRSC_CG10128 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10128.sub_3089.merged
GEO: GSM461201
GEO: GSM627335
SRA: SRR031766
SRA: SRR031767
SRA: SRR074430
...All entries in public repositories generated by this submission



5 files Download data files
modENCODE_3127

S2-DRSC-CG18350-RNAi S2-DRSC_CG18350 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG18350.sub_3127.merged
GEO: GSM627358
GEO: GSM627359
SRA: SRR074463
SRA: SRR074464
SRA: SRR074465
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3128

S2-DRSC-CG16788-RNAi S2-DRSC_CG16788 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG16788.sub_3128.merged
GEO: GSM627353
GEO: GSM627354
SRA: SRR074457
SRA: SRR074458


2 files Download data files
modENCODE_3129

S2-DRSC-CG1559-RNAi S2-DRSC_CG1559 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG1559.sub_3129.merged
GEO: GSM461204
GEO: GSM627350
SRA: SRR074453
SRA: SRR074454
SRA: SRX014486


4 files Download data files
modENCODE_3130

S2-DRSC-CG10377-RNAi S2-DRSC_CG10377 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10377.sub_3130.merged
GEO: GSM627341
GEO: GSM627342
SRA: SRR074441
SRA: SRR074442


2 files Download data files
modENCODE_3131

S2-DRSC-CG9412-RNAi S2-DRSC_CG9412 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG9412.sub_3131.merged
GEO: GSM627416
GEO: GSM627417
SRA: SRR074547
SRA: SRR074548


2 files Download data files
modENCODE_3121

S2-DRSC-CG4816-RNAi S2-DRSC_CG4816 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG4816.sub_3121.merged
GEO: GSM627379
GEO: GSM627395
SRA: SRR074491
SRA: SRR074514


2 files Download data files
modENCODE_3122

S2-DRSC-CG3584-RNAi S2-DRSC_CG3584 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG3584.sub_3122.merged
GEO: GSM627372
GEO: GSM627373
SRA: SRR074483
SRA: SRR074484


2 files Download data files
modENCODE_3123

S2-DRSC-CG1646-RNAi S2-DRSC_CG1646 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG1646.sub_3123.merged
GEO: GSM627351
GEO: GSM627352
SRA: SRR074455
SRA: SRR074456


2 files Download data files
modENCODE_3124

S2-DRSC-CG10851-RNAi S2-DRSC_CG10851 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG10851.sub_3124.merged
GEO: GSM461198
GEO: GSM627343
SRA: SRR031760
SRA: SRR031761
SRA: SRR074443
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3125

S2-DRSC-CG5099-RNAi S2-DRSC_CG5099 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG5099.sub_3125.merged
GEO: GSM461185
GEO: GSM627383
SRA: SRR031734
SRA: SRR031735
SRA: SRR074495
...All entries in public repositories generated by this submission



4 files Download data files
modENCODE_3126

S2-DRSC-CG4760-RNAi S2-DRSC_CG4760 [ALL]
S2-DRSC [ALL]
embargo expired
GBrowse tracks: CG4760.sub_3126.merged
GEO: GSM627377
GEO: GSM627378
SRA: SRR074489
SRA: SRR074490


2 files Download data files