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RNA made in Bloomington

experiment: RNA made in Bloomington project: The Drosophila Transcriptome PI: Sue Celniker Labs: Peter Cherbas, Tom Gingeras
This is not an experiment per se but contains metadata about RNA samples created at Indiana University, Bloomington by the Cherbas lab, and used in the modENCODE project.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 17 Sample creation submissions for this experiment:
DCC id Name developmental stage cell line compartment compound strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_3970


Related to: modENCODE_4330
modENCODE_4331
modENCODE_4325
modENCODE_4324
modENCODE_4343
modENCODE_4349
modENCODE_4348
modENCODE_4337
modENCODE_4336
modENCODE_4342
modENCODE_4223
modENCODE_5333
modENCODE_4224
modENCODE_4218
modENCODE_4230
modENCODE_4229
modENCODE_4235
modENCODE_4236
modENCODE_4212
modENCODE_4211
modENCODE_4217

Cell line nuclear small-RNA (<200nt) samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
S2R+ [ALL]
nucleus [ALL]
embargo expired Download data files
modENCODE_3885


Related to: modENCODE_3831
modENCODE_3962
modENCODE_3961

5' Monophosphate smallRNA (<200nt) PolyA-tail samples S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
embargo expired Download data files
modENCODE_5519


Related to: modENCODE_5334
modENCODE_5335
modENCODE_5336
modENCODE_5337

Ecdysone treatments of D. melanogaster BG3 cells ML-DmBG3-c2 [ALL]
ecdysone [ALL]
embargo expired Download data files
modENCODE_3972


Related to: modENCODE_4327
modENCODE_4333
modENCODE_4332
modENCODE_4320
modENCODE_4326
modENCODE_4321
modENCODE_4345
modENCODE_4344
modENCODE_4338
modENCODE_4339
modENCODE_5331
modENCODE_4225
modENCODE_4219
modENCODE_4220
modENCODE_4231
modENCODE_4232
modENCODE_4226
modENCODE_4208
modENCODE_4207
modENCODE_4213
modENCODE_5334
modENCODE_4214

Cell line whole cell small-RNA (<200nt) samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
S2R+ [ALL]
cell [ALL]
embargo expired Download data files
modENCODE_5499


Related to: modENCODE_5497
modENCODE_5518

Genomic DNA samples from Drosophila strains adult virgin female [ALL]
Oregon-R-modENCODE [ALL]
Oregon-R Elgin [ALL]
Oregon-R Orr-Weaver [ALL]
embargo expired Download data files
modENCODE_560


Related to: modENCODE_268
modENCODE_713
modENCODE_717
modENCODE_718

Cell line polyA RNA samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
G2 [ALL]
embargo expired Download data files
modENCODE_3724


Related to: modENCODE_4286
modENCODE_4287
modENCODE_4288
modENCODE_4289
modENCODE_4290
modENCODE_4689
modENCODE_4690
modENCODE_4687
modENCODE_4688
modENCODE_4691
modENCODE_4353
modENCODE_4366
modENCODE_4368
modENCODE_4369
modENCODE_4362
modENCODE_4365
modENCODE_4358
modENCODE_4359
modENCODE_4360
modENCODE_4361
modENCODE_4354
modENCODE_4355
modENCODE_4356
modENCODE_4357
modENCODE_4371
modENCODE_4370
modENCODE_4373
modENCODE_4372
modENCODE_4676
modENCODE_4677
modENCODE_4678
modENCODE_4672
modENCODE_4673
modENCODE_4674
modENCODE_4675
modENCODE_4683
modENCODE_4684
modENCODE_4686
modENCODE_4679
modENCODE_4680
modENCODE_4276
modENCODE_4277
modENCODE_4274
modENCODE_4275
modENCODE_4272
modENCODE_4273
modENCODE_4270
modENCODE_4271
modENCODE_4285
modENCODE_4671
modENCODE_4282
modENCODE_4283
modENCODE_4278
modENCODE_4279

Treatments compound treated totalRNA sample metadata L3 stage wandering larvae [ALL]
Adult mixed-sex flies [ALL]
resveratrol [ALL]
ethanol [ALL]
rotenone [ALL]
paraquat [ALL]
caffeine [ALL]
Oregon-R-modENCODE [ALL]
embargo expired Download data files
modENCODE_3316


Related to: modENCODE_3831
modENCODE_3317
modENCODE_3358
modENCODE_3359
modENCODE_3360
modENCODE_3962
modENCODE_3940

Capped smallRNA (<200nt) PolyA-tail samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
embargo expired
GBrowse tracks: submission_3317.sorted
submission_3358.sorted
submission_3359.sorted
submission_3360.sorted
Download data files
modENCODE_574


Related to: modENCODE_100
modENCODE_3305
modENCODE_101
modENCODE_103
modENCODE_1040
modENCODE_2929
modENCODE_1041
modENCODE_1042
modENCODE_1043
modENCODE_1044
modENCODE_105
modENCODE_107
modENCODE_109
modENCODE_111
modENCODE_113
modENCODE_116
modENCODE_117
modENCODE_118
modENCODE_120
modENCODE_2549
modENCODE_2676
modENCODE_4057
modENCODE_2677
modENCODE_2678
modENCODE_2679
modENCODE_2680
modENCODE_2681
modENCODE_2682
modENCODE_2683
modENCODE_2684
modENCODE_2685
modENCODE_2686
modENCODE_2687
modENCODE_2896
modENCODE_2897
modENCODE_2928
modENCODE_3248
modENCODE_97
modENCODE_96
modENCODE_99
modENCODE_98
modENCODE_545
modENCODE_544
modENCODE_763
modENCODE_93
modENCODE_94
modENCODE_95
modENCODE_543
modENCODE_542
modENCODE_541
modENCODE_540
modENCODE_539
modENCODE_538
modENCODE_34
modENCODE_343
modENCODE_3721
modENCODE_3723
modENCODE_4433
modENCODE_4741
modENCODE_4463
modENCODE_4434
modENCODE_4742
modENCODE_4464
modENCODE_4435
modENCODE_4743
modENCODE_4465
modENCODE_4436
modENCODE_4744
modENCODE_4466
modENCODE_4437
modENCODE_4745
modENCODE_4467
modENCODE_4438
modENCODE_4468
modENCODE_4746
modENCODE_4439
modENCODE_4469
modENCODE_4747
modENCODE_4440
modENCODE_4470
modENCODE_4748
modENCODE_4441
modENCODE_4471
modENCODE_4749
modENCODE_4442
modENCODE_4472
modENCODE_4750
modENCODE_4443
modENCODE_4473
modENCODE_4751
modENCODE_4444
modENCODE_4474
modENCODE_4752
modENCODE_4445
modENCODE_4475
modENCODE_4753
modENCODE_4446
modENCODE_4476
modENCODE_4754
modENCODE_4447
modENCODE_4755
modENCODE_4477
modENCODE_4448
modENCODE_4756
modENCODE_4478
modENCODE_4449
modENCODE_4757
modENCODE_4479
modENCODE_4450
modENCODE_4758
modENCODE_4480
modENCODE_4451
modENCODE_4759
modENCODE_4481
modENCODE_4452
modENCODE_4760
modENCODE_4482
modENCODE_4453
modENCODE_4483
modENCODE_4761
modENCODE_4454
modENCODE_4484
modENCODE_4762
modENCODE_4455
modENCODE_4485
modENCODE_4763
modENCODE_4456
modENCODE_4486
modENCODE_4764
modENCODE_4457
modENCODE_4487
modENCODE_4765
modENCODE_4458
modENCODE_4488
modENCODE_4766
modENCODE_4459
modENCODE_4489
modENCODE_4767
modENCODE_4460
modENCODE_4490
modENCODE_4768
modENCODE_4461
modENCODE_4491
modENCODE_4769
modENCODE_4462
modENCODE_4492
modENCODE_4770
modENCODE_4595
modENCODE_4607
modENCODE_4596
modENCODE_4608
modENCODE_4597
modENCODE_4609
modENCODE_4598
modENCODE_4610
modENCODE_4599
modENCODE_4611
modENCODE_4600
modENCODE_4612
modENCODE_4601
modENCODE_4613
modENCODE_4602
modENCODE_4614
modENCODE_4603
modENCODE_4615
modENCODE_4604
modENCODE_4616
modENCODE_4605
modENCODE_4617
modENCODE_4606
modENCODE_4618
modENCODE_513
modENCODE_514
modENCODE_5330
modENCODE_5531
modENCODE_5338
modENCODE_5339
modENCODE_5340
modENCODE_5341
modENCODE_5342
modENCODE_5343
modENCODE_5344
modENCODE_5345
modENCODE_5346
modENCODE_5347
modENCODE_5348
modENCODE_5349
modENCODE_5350
modENCODE_5351
modENCODE_5535
modENCODE_5549
modENCODE_2743
modENCODE_2742
modENCODE_2009
modENCODE_2008
modENCODE_712

Dev Timecourse TotalRNA isolation L3 stage larvae [ALL]
Embryo 0-2 h [ALL]
Embryo 8-10 h [ALL]
Mixed Embryo 0-24 h [ALL]
Embryo 10-12 h [ALL]
...
all 27 developmental stages
yellow cinnabar brown speck [ALL]
Oregon-R-modENCODE [ALL]
embargo expired Download data files
modENCODE_3725


Related to: modENCODE_4367
modENCODE_4363
modENCODE_4364
modENCODE_4284
modENCODE_4685
modENCODE_4280
modENCODE_4281
modENCODE_4681
modENCODE_4682

Treatments tempshock totalRNA sample metadata adult [ALL]
Oregon-R-modENCODE [ALL]
embargo expired Download data files
modENCODE_577


Related to: modENCODE_102
modENCODE_104
modENCODE_106
modENCODE_108
modENCODE_110
modENCODE_112
modENCODE_114
modENCODE_115
modENCODE_119
modENCODE_121
modENCODE_122
modENCODE_3250
modENCODE_5330
modENCODE_5531
modENCODE_5536
modENCODE_5550

Dev Timecourse polyA RNA samples Embryo 0-2 h [ALL]
Embryo 8-10 h [ALL]
Mixed Embryo 0-24 h [ALL]
Embryo 10-12 h [ALL]
Embryo 12-14 h [ALL]
...
all 13 developmental stages
yellow cinnabar brown speck [ALL]
embargo expired Download data files
modENCODE_5327


Related to: modENCODE_5330
modENCODE_5531

RNA samples for longRT-PCR for transcript validation Mixed Embryo 0-24 h [ALL]
yellow cinnabar brown speck [ALL]
Oregon-R-modENCODE [ALL]
embargo expired Download data files
modENCODE_555


Related to: modENCODE_3305
modENCODE_139
modENCODE_140
modENCODE_2270
modENCODE_55
modENCODE_337
modENCODE_49
modENCODE_48
modENCODE_51
modENCODE_50
modENCODE_52
modENCODE_64
modENCODE_40
modENCODE_65
modENCODE_66
modENCODE_67
modENCODE_69
modENCODE_53
modENCODE_63
modENCODE_62
modENCODE_61
modENCODE_60
modENCODE_59
modENCODE_58
modENCODE_57
modENCODE_56
modENCODE_54
modENCODE_342
modENCODE_360
modENCODE_362
modENCODE_364
modENCODE_366
modENCODE_4391
modENCODE_4412
modENCODE_4720
modENCODE_4392
modENCODE_4413
modENCODE_4721
modENCODE_4393
modENCODE_4414
modENCODE_4722
modENCODE_4394
modENCODE_4723
modENCODE_4415
modENCODE_4395
modENCODE_4416
modENCODE_4724
modENCODE_4396
modENCODE_4725
modENCODE_4417
modENCODE_4397
modENCODE_4418
modENCODE_4726
modENCODE_4398
modENCODE_4419
modENCODE_4727
modENCODE_4399
modENCODE_4728
modENCODE_4420
modENCODE_4400
modENCODE_4729
modENCODE_4421
modENCODE_4401
modENCODE_4730
modENCODE_4422
modENCODE_4402
modENCODE_4731
modENCODE_4423
modENCODE_4403
modENCODE_4732
modENCODE_4424
modENCODE_4404
modENCODE_4733
modENCODE_4425
modENCODE_4405
modENCODE_4734
modENCODE_4426
modENCODE_4406
modENCODE_4427
modENCODE_4735
modENCODE_4408
modENCODE_4429
modENCODE_4737
modENCODE_4409
modENCODE_4430
modENCODE_4738
modENCODE_4410
modENCODE_4739
modENCODE_4431
modENCODE_4411
modENCODE_4740
modENCODE_4432
modENCODE_4407
modENCODE_5330
modENCODE_5531
modENCODE_3743
modENCODE_3742
modENCODE_3741
modENCODE_3514
modENCODE_3513
modENCODE_3512
modENCODE_3511
modENCODE_3309
modENCODE_3307
modENCODE_3193
modENCODE_3311
modENCODE_3310
modENCODE_3510
modENCODE_3508
modENCODE_3506
modENCODE_2721
modENCODE_2820
modENCODE_5963
modENCODE_5962
modENCODE_5961
modENCODE_5952
modENCODE_5959
modENCODE_5960
modENCODE_5957
modENCODE_5958
modENCODE_5955
modENCODE_5956
modENCODE_5953
modENCODE_5954

Cell line Total RNA samples mbn2 [ALL]
CME W2 [ALL]
CME L1 [ALL]
Kc167 [ALL]
S2-DRSC [ALL]
...
all 27 cell lines
embargo expired
GBrowse tracks: 1182-4H.sub_4412.bam
ML-DmD16-c3.sub_4421.bam
Download data files
modENCODE_559


Related to: modENCODE_267
modENCODE_715
modENCODE_716

Cell line Nuclear RNA samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
embargo expired Download data files
modENCODE_3207


Related to: modENCODE_4294
modENCODE_4295
modENCODE_4296
modENCODE_4297
modENCODE_4298
modENCODE_4299
modENCODE_4300
modENCODE_4301
modENCODE_4291
modENCODE_4292
modENCODE_4293
modENCODE_4311
modENCODE_4310
modENCODE_4313
modENCODE_4312
modENCODE_4315
modENCODE_4314
modENCODE_4317
modENCODE_4316
modENCODE_4303
modENCODE_4302
modENCODE_4305
modENCODE_4304
modENCODE_4307
modENCODE_4306
modENCODE_4309
modENCODE_4308
modENCODE_5269
modENCODE_5268
modENCODE_4318
modENCODE_4319
modENCODE_5300
modENCODE_5299
modENCODE_5298
modENCODE_5297
modENCODE_5296
modENCODE_5295
modENCODE_5294
modENCODE_5293
modENCODE_5292
modENCODE_5291
modENCODE_5290
modENCODE_5289
modENCODE_5288
modENCODE_5287
modENCODE_5286
modENCODE_5284
modENCODE_5285
modENCODE_5282
modENCODE_5283
modENCODE_5280
modENCODE_5281
modENCODE_5278
modENCODE_5279
modENCODE_5276
modENCODE_5277
modENCODE_5274
modENCODE_5275
modENCODE_5272
modENCODE_5368
modENCODE_5273
modENCODE_5367
modENCODE_5270
modENCODE_5366
modENCODE_5271
modENCODE_5362
modENCODE_5363
modENCODE_5364
modENCODE_5365
modENCODE_5358
modENCODE_5359
modENCODE_5325
modENCODE_5360
modENCODE_5361
modENCODE_5354
modENCODE_5322
modENCODE_5355
modENCODE_5321
modENCODE_5356
modENCODE_5324
modENCODE_5357
modENCODE_5323
modENCODE_5318
modENCODE_5317
modENCODE_5352
modENCODE_5320
modENCODE_5353
modENCODE_5319
modENCODE_5313
modENCODE_5314
modENCODE_5315
modENCODE_5316
modENCODE_5309
modENCODE_5310
modENCODE_5311
modENCODE_5312
modENCODE_5305
modENCODE_5306
modENCODE_5307
modENCODE_5308
modENCODE_5301
modENCODE_5302
modENCODE_5303
modENCODE_5304
modENCODE_3446
modENCODE_3445
modENCODE_4646
modENCODE_4647
modENCODE_4644
modENCODE_4645
modENCODE_4642
modENCODE_4643
modENCODE_4654
modENCODE_4655
modENCODE_4652
modENCODE_4653
modENCODE_4650
modENCODE_4651
modENCODE_4648
modENCODE_4649
modENCODE_4242
modENCODE_4243
modENCODE_4244
modENCODE_4245
modENCODE_4241
modENCODE_4250
modENCODE_4251
modENCODE_4252
modENCODE_4253
modENCODE_4246
modENCODE_4247
modENCODE_4248
modENCODE_4249
modENCODE_4261
modENCODE_4260
modENCODE_5538
modENCODE_4259
modENCODE_5537
modENCODE_4258
modENCODE_4257
modENCODE_4256
modENCODE_4255
modENCODE_4254
modENCODE_5551
modENCODE_4269
modENCODE_4268
modENCODE_4267
modENCODE_5552
modENCODE_4266
modENCODE_4265
modENCODE_4264
modENCODE_4263
modENCODE_4262
modENCODE_4661
modENCODE_4660
modENCODE_4663
modENCODE_4662
modENCODE_4657
modENCODE_4656
modENCODE_4659
modENCODE_4658
modENCODE_4669
modENCODE_4668
modENCODE_4670
modENCODE_4665
modENCODE_4664
modENCODE_4667
modENCODE_4666

Tissue TotalRNA isolation Pupae [ALL]
pupae [ALL]
L3 stage wandering larvae [ALL]
White prepupae (WPP) [ALL]
adult mated female [ALL]
...
all 11 developmental stages
Oregon-R-modENCODE [ALL]
salivary glands [ALL]
central nervous system [ALL]
fat body [ALL]
imaginal discs [ALL]
testes [ALL]
embargo expired
GBrowse tracks: AdMatedM_Ecl_4days_Heads.merged.bam
AdMatedM_Ecl_20days_Heads.merged.bam
L3_FatBody.merged.bam
submission_4664.sorted
submission_4642.sorted
submission_4646.sorted
submission_3445.sorted
submission_3446.sorted
submission_4666.sorted
submission_4644.sorted
submission_4649.sorted
submission_4667.sorted
submission_4645.sorted
submission_4650.sorted
submission_4648.sorted
submission_4656.sorted
submission_4655.sorted
submission_4665.sorted
submission_4643.sorted
submission_4647.sorted
submission_4654.sorted
submission_4651.sorted
submission_4652.sorted
submission_4653.sorted
submission_4661.sorted
submission_4662.sorted
submission_4663.sorted
submission_4660.sorted
submission_4659.sorted
submission_4658.sorted
submission_4670.sorted
submission_4669.sorted
submission_4657.sorted
submission_4668.sorted
Download data files
modENCODE_3971


Related to: modENCODE_4329
modENCODE_4328
modENCODE_4334
modENCODE_4322
modENCODE_4323
modENCODE_4346
modENCODE_4347
modENCODE_4335
modENCODE_4341
modENCODE_4340
modENCODE_4222
modENCODE_5332
modENCODE_4221
modENCODE_4233
modENCODE_4227
modENCODE_4228
modENCODE_4234
modENCODE_4209
modENCODE_4210
modENCODE_4216
modENCODE_4215

Cell line cytoplasmic small-RNA (<200nt) samples Kc167 [ALL]
S2-DRSC [ALL]
CME W1 Cl.8+ [ALL]
ML-DmBG3-c2 [ALL]
S2R+ [ALL]
cytoplasm [ALL]
embargo expired Download data files
modENCODE_5498


Related to: modENCODE_5479
modENCODE_5500
modENCODE_5480
modENCODE_5501
modENCODE_5482
modENCODE_5503
modENCODE_5483
modENCODE_5504
modENCODE_5484
modENCODE_5505
modENCODE_5486
modENCODE_5507
modENCODE_5487
modENCODE_5508
modENCODE_5488
modENCODE_5509
modENCODE_5489
modENCODE_5510
modENCODE_5490
modENCODE_5511
modENCODE_5491
modENCODE_5512
modENCODE_5492
modENCODE_5513
modENCODE_5493
modENCODE_5514
modENCODE_5494
modENCODE_5515
modENCODE_5495
modENCODE_5516
modENCODE_5496
modENCODE_5517

Genomic DNA samples from D. melanogaster cell lines mbn2 [ALL]
CME W2 [ALL]
CME L1 [ALL]
Kc167 [ALL]
S2-DRSC [ALL]
...
all 22 cell lines
embargo expired Download data files