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Identification of transcribed sequences with expression profile maps

experiment: Identification of transcribed sequences with expression profile maps project: The Drosophila Transcriptome PI: Sue Celniker Labs: Tom Gingeras
We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs.

All features generated by this experiment:
Feature Export
TranscriptRegion ? 3665935
This represents 1417382 unique TranscriptRegions
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 80 tiling array:RNA and tiling array: RNA submissions for this experiment:
DCC id Name developmental stage cell line strain Embargoed until Features, GBrowse and Data Files
modENCODE_540


Related to: modENCODE_574
modENCODE_3305

Dro2 AS L3-larvae-light-blue L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 52881   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L3-light-blue


4 files Download data files
modENCODE_122


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 6-8h poly-Ap p200 412-413-414 38bp Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 38282   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_6-8h


4 files Download data files
modENCODE_54


Related to: modENCODE_3305
modENCODE_555

Dm ML-DmD11 TotalRNA p200 170-172-174 38bp ML-DmD11 [ALL]
embargo expired
? TranscriptRegion: 45188   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD11


4 files Download data files
modENCODE_539


Related to: modENCODE_574
modENCODE_3305

Dro2 AS L3-larvae-clear L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 60044   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L3-clear


4 files Download data files
modENCODE_538


Related to: modENCODE_574
modENCODE_3305

Dro2 AS Dm L3-12hr larvae L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 42398   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L3-12hr


4 files Download data files
modENCODE_121


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 4-6h poly-Ap p200 409-410-411 38bp Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 28550   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_4-6h


4 files Download data files
modENCODE_59


Related to: modENCODE_3305
modENCODE_555

Dm DmD32 TotalRNA p200 164-166-168 38bp ML-DmD32 [ALL]
embargo expired
? TranscriptRegion: 51344   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD32


4 files Download data files
modENCODE_119


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 2-4h poly-Ap p200 406-407-408 38bp Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 23407   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_2-4h


4 files Download data files
modENCODE_58


Related to: modENCODE_3305
modENCODE_555

Dm DmD21 TotalRNA p200 050-052-054 38bp ML-DmD21 [ALL]
embargo expired
? TranscriptRegion: 48925   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD21


5 files Download data files
modENCODE_120


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 4-6h TotalRNA p200 224-226-228 38bp Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 40757   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_4-6h


4 files Download data files
modENCODE_57


Related to: modENCODE_3305
modENCODE_555

Dm DmD20-c5 TotalRNA p200 188-190-192 38bp ML-DmD20-c5 [ALL]
embargo expired
? TranscriptRegion: 49338   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD20-c5


4 files Download data files
modENCODE_56


Related to: modENCODE_3305
modENCODE_555

Dm DmD20-c2 TotalRNA p200 182-184-186 38bp ML-DmD20-c2 [ALL]
embargo expired
? TranscriptRegion: 48329   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD20-c2


4 files Download data files
modENCODE_118


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 2-4h TotalRNA p200 218-220-222 38bp Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 27678   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_2-4h


4 files Download data files
modENCODE_117


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 22-24h TotalRNA p200 278-280-282 38bp Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 42141   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_22-24h


4 files Download data files
modENCODE_116


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 20-22h TotalRNA p200 274-276 38bp Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 32699   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_20-22h


3 files Download data files
modENCODE_115


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 20-22h poly-Ap p200 433-434-435 38bp Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 49890   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_20-22h


4 files Download data files
modENCODE_140


Related to: modENCODE_3305
modENCODE_555

Dm CME W2 TotalRNA p200 460-462-464 38bp CME W2 [ALL]
embargo expired
? TranscriptRegion: 41323   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CME_W2


4 files Download data files
modENCODE_139


Related to: modENCODE_3305
modENCODE_555

Dm mbn2 TotalRNA p200 044-046-048 38bp mbn2 [ALL]
embargo expired
? TranscriptRegion: 41012   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: mbn2


4 files Download data files
modENCODE_2341

Dm 1dFVirginHead TotalRNA 497 498 38bp embargo expired
? TranscriptRegion: 41125   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_VirginHead_F_1d


3 files Download data files
modENCODE_96


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Female 1dayPostEclosion TotalRNA p200 374-376-378 38bp Adult virgin female eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 44385   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Female_1dayPostEclosion


4 files Download data files
modENCODE_2342

Dm 4dFVirginHead TotalRNA 515 516 38bp embargo expired
? TranscriptRegion: 47832   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_VirginHead_F_4d


3 files Download data files
modENCODE_99


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Male 5dayPostEclosion TotalRNA p200 380-382-384 38bp Adult male eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 56904   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Male_5dayPostEclosion


4 files Download data files
modENCODE_49


Related to: modENCODE_3305
modENCODE_555

Dm CME-W1-Cl.8p TotalRNA p200 060-062-064 38bp CME W1 Cl.8+ [ALL]
embargo expired
? TranscriptRegion: 58138   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CME-W1-CL8%2B


5 files Download data files
modENCODE_48


Related to: modENCODE_3305
modENCODE_555

Dm CME-L1 TotalRNA p200 086-088-090 38bp CME L1 [ALL]
embargo expired
? TranscriptRegion: 37980   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CME-L1


4 files Download data files
modENCODE_337


Related to: modENCODE_3305
modENCODE_555

Dm ML-DmBG2-c2 TotalRNA p200 470-472-474 38bp ML-DmBG2-c2 [ALL]
embargo expired
? TranscriptRegion: 37398   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmBG2-c2


4 files Download data files
modENCODE_97


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Female 5dayPostEclosion TotalRNA p200 386-388-390 38bp Adult female eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 33972   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Female_5dayPostEclosion


4 files Download data files
modENCODE_2340

Dm 4dFMatedOvary TotalRNA 531 532 38bp embargo expired
? TranscriptRegion: 33107   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_MatedOvary_F_4d


3 files Download data files
modENCODE_55


Related to: modENCODE_3305
modENCODE_555

Dm DmD17-c3 TotalRNA p200 194-196-198 38bp ML-DmD17-c3 [ALL]
embargo expired
? TranscriptRegion: 53610   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD17-c3


4 files Download data files
modENCODE_40


Related to: modENCODE_3305
modENCODE_555

Dm 1182-4H TotalRNA p200 038-040-042 38bp 1182-4H [ALL]
embargo expired
? TranscriptRegion: 56002   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: 1182-4H


4 files Download data files
modENCODE_65


Related to: modENCODE_3305
modENCODE_555

Dm S2Rp TotalRNA p200 020-022-024 38bp S2R+ [ALL]
embargo expired
? TranscriptRegion: 48827   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S2R%2B


4 files Download data files
modENCODE_545


Related to: modENCODE_574
modENCODE_3305

Dro2 AS Dm WPP+24hr White prepupae (WPP) + 24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 71448   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White-24hr


4 files Download data files
modENCODE_64


Related to: modENCODE_3305
modENCODE_555

Dm S2-DRSC TotalRNA p200 014-016-018 38bp S2-DRSC [ALL]
embargo expired
? TranscriptRegion: 37083   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S2-DRSC


4 files Download data files
modENCODE_50


Related to: modENCODE_3305
modENCODE_555

Dm GM2 TotalRNA p200 008-010-012 38bp GM2 [ALL]
embargo expired
? TranscriptRegion: 41579   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: GM2


4 files Download data files
modENCODE_52


Related to: modENCODE_3305
modENCODE_555

Dm ML-DmBG1-c2 TotalRNA p200 116-118-120 38bp ML-DmBG1-c1 [ALL]
embargo expired
? TranscriptRegion: 47262   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmBG1-c2


4 files Download data files
modENCODE_51


Related to: modENCODE_3305
modENCODE_555

Dm Kc167 TotalRNA p200 002-004-006 38bp Kc167 [ALL]
embargo expired
? TranscriptRegion: 52353   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Kc167


4 files Download data files
modENCODE_98


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Male 1dayPostEclosion TotalRNA p200 368-370-372 38bp Adult male eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 59661   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Male_1dayPostEclosion


4 files Download data files
modENCODE_95


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] prepupa WhitePrePupae TotalRNA p200 326-328-330 38bp White prepupae (WPP) [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 48560   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White


4 files Download data files
modENCODE_94


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] larval L2 TotalRNA p200 290-292-294 38bp L2 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 43665   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L2


4 files Download data files
modENCODE_93


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] larval L1 TotalRNA p200 284-286-288 38bp L1 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 58258   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L1


4 files Download data files
modENCODE_763


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 6-8h TotalRNA p200 230-232 38bp Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 36255   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_6-8h


3 files Download data files
modENCODE_69


Related to: modENCODE_3305
modENCODE_555

Dm DmD16-c3 TotalRNA p200 138-136-138 38bp ML-DmD16-c3 [ALL]
embargo expired
? TranscriptRegion: 56729   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD16-c3


4 files Download data files
modENCODE_544


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] prepupa WhitePrePupap12h TotalRNA p200 332-334-336 38bp White prepupae (WPP) + 12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 66288   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White-12hr


4 files Download data files
modENCODE_67


Related to: modENCODE_3305
modENCODE_555

Dm Sg4 TotalRNA p200 200-202-204 38bp Sg4 [ALL]
embargo expired
? TranscriptRegion: 41655   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Sg4


4 files Download data files
modENCODE_66


Related to: modENCODE_3305
modENCODE_555

Dm S3 TotalRNA p200 104-106-108 38bp S3 [ALL]
embargo expired
? TranscriptRegion: 45615   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S3


4 files Download data files
modENCODE_541


Related to: modENCODE_574
modENCODE_3305

Dro2 AS Dm WPP+2days Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 69097   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White-2days


4 files Download data files
modENCODE_60


Related to: modENCODE_3305
modENCODE_555

Dm DmD4-c1 TotalRNA p200 140-142-144 38bp ML-DmD4-c1 [ALL]
embargo expired
? TranscriptRegion: 33971   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD4-c1


5 files Download data files
modENCODE_267


Related to: modENCODE_559

Dm Kc167 nuclearRNA p200 475-476-477 38bp Kc167 [ALL]
embargo expired
? TranscriptRegion: 52384   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Kc167-nucl.RNA


4 files Download data files
modENCODE_61


Related to: modENCODE_3305
modENCODE_555

Dm DmD8 TotalRNA p200 206-208-210 38bp ML-DmD8 [ALL]
embargo expired
? TranscriptRegion: 37285   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD8


4 files Download data files
modENCODE_62


Related to: modENCODE_3305
modENCODE_555

Dm DmD9 TotalRNA p200 072-074-076 38bp ML-DmD9 [ALL]
embargo expired
? TranscriptRegion: 53180   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmD9


4 files Download data files
modENCODE_63


Related to: modENCODE_3305
modENCODE_555

Dm S1 TotalRNA p200 026-028-030 38bp S1 [ALL]
embargo expired
? TranscriptRegion: 53195   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S1


4 files Download data files
modENCODE_542


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] pupa WhitePrePupaep3day TotalRNA p200 350-352-354 38bp Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 65460   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White-3days


4 files Download data files
modENCODE_53


Related to: modENCODE_3305
modENCODE_555

Dm ML-DmBG3-c2 TotalRNA p200 122-124-126 38bp ML-DmBG3-c2 [ALL]
embargo expired
? TranscriptRegion: 46167   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML-DmBG3-c2


4 files Download data files
modENCODE_543


Related to: modENCODE_574
modENCODE_3305

Dro2 AS Dm WPP+4days Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 65460   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_prepupae_White-4days


4 files Download data files
modENCODE_100


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] larval L3 gut stage1 TotalRNA p200 440-442-444 38bp L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 44097   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_larval_L3_gut_stage1


4 files Download data files
modENCODE_101


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 0-2h TotalRNA p200 212-214-216 38bp Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 30970   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_0-2h


4 files Download data files
modENCODE_102


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 0-2h poly-Ap p200 403-404-405 38bp Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 26244   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_0-2h


4 files Download data files
modENCODE_104


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 8-10h poly-Ap p200 415-416-417 38bp Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 38690   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_8-10h


4 files Download data files
modENCODE_103


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 8-10h TotalRNA p200 236-238-240 38bp Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 58715   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_8-10h


4 files Download data files
modENCODE_3248


Related to: modENCODE_574

Dm y[1]cn[1] bw[1] sp[1] embryo 4-6h TotalRNA p200 224-226-228 7bp Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 74668   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: EMBRYO_SG7b_Total


16 files Download data files
modENCODE_718


Related to: modENCODE_560

Dm S2-DRSC polyApRNA p200 479-480-481 38bp S2-DRSC [ALL]
embargo expired
? TranscriptRegion: 32212   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S2_DRSC_polyA


4 files Download data files
modENCODE_717


Related to: modENCODE_560

Dm C1.8 polyApRNA p200 491 492 493 38bp CME W1 Cl.8+ [ALL]
embargo expired
? TranscriptRegion: 40036   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: C1_8_polyA


4 files Download data files
modENCODE_713


Related to: modENCODE_560

Dm ML BG3-c2 polyApRNA p200 485-486-487 38bp ML-DmBG3-c2 [ALL]
embargo expired
? TranscriptRegion: 29510   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML_DmBG3_c2_polyA


4 files Download data files
modENCODE_3250


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 4-6h Poly-Ap p200 409-410-411 7bp Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 58086   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: EMBRYO_SG7b_polyA


16 files Download data files
modENCODE_716


Related to: modENCODE_559

Dm Bg3-c2 nuclearRNA p200 488 489 490 38bp ML-DmBG3-c2 [ALL]
embargo expired
? TranscriptRegion: 62967   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ML_DmBG3_c2_nucl


4 files Download data files
modENCODE_715


Related to: modENCODE_559

Dm S2-DRSC nuclearRNA p200 482-483-484 38bp S2-DRSC [ALL]
embargo expired
? TranscriptRegion: 43145   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: S2_DRSC_nucl


4 files Download data files
modENCODE_105


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 10-12h TotalRNA p200 242-244-246 38bp Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 43936   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_10-12h


4 files Download data files
modENCODE_107


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 12-14h TotalRNA p200 248-250-252 38bp Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 38310   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_12-14h


4 files Download data files
modENCODE_106


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 10-12h poly-Ap p200 418-419-420 38bp Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 40555   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_10-12h


4 files Download data files
modENCODE_268


Related to: modENCODE_560

Dm Kc167 polyApRNA p200 145-146-147 38bp Kc167 [ALL]
embargo expired
? TranscriptRegion: 49606   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Kc167-polyA.RNA


4 files Download data files
modENCODE_109


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 14-16h TotalRNA p200 254-256-258 38bp Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 44668   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_14-16h


4 files Download data files
modENCODE_108


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 12-14h poly-Ap p200 421-422-423 38bp Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 34661   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_12-14h


4 files Download data files
modENCODE_110


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 14-16h poly-Ap p200 424-425 38bp Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 33170   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_14-16h


3 files Download data files
modENCODE_111


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 16-18h TotalRNA p200 260-262-264 38bp Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 37935   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_16-18h


4 files Download data files
modENCODE_2896


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Female 30dayPostEclosion TotalRNA p200 398-400-402 38bp Adult female eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 47582   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Female_30daysPostEclosion


4 files Download data files
modENCODE_514


Related to: modENCODE_574

Dm OregonR embryo 14-16h totalRNA p200 130-131-132 38bp Embryo 14-16 h [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
? TranscriptRegion: 33170   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_2-4h


4 files Download data files
modENCODE_112


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 16-18h poly-Ap p200 427-428-429 38bp Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 43050   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_16-18h


4 files Download data files
modENCODE_513


Related to: modENCODE_574

Dm OregonR embryo 2-4h totalRNA p200 127-128-129 38bp Embryo 2-4 h [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
? TranscriptRegion: 23407   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_14-16h


4 files Download data files
modENCODE_2897


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] adult Male 30dayPostEclosion TotalRNA p200 392-394-396 38bp Adult male eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 59983   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Dm_adult_Male_30daysPostEclosion


4 files Download data files
modENCODE_113


Related to: modENCODE_574
modENCODE_3305

Dm y[1]cn[1] bw[1] sp[1] embryo 18-20h TotalRNA p200 266-268-270 38bp Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 50243   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_18-20h


4 files Download data files
modENCODE_114


Related to: modENCODE_577

Dm y[1]cn[1] bw[1] sp[1] embryo 18-20h poly-Ap p200 431-432 38bp Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
? TranscriptRegion: 50243   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: embryo_18-20h


3 files Download data files