modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Identification of tissue and stage-specific transcribed sequences with expression profile maps

experiment: Identification of tissue and stage-specific transcribed sequences with expression profile maps project: The C. elegans Transcriptome PI: Robert Waterston Labs: David Miller, Valerie Reinke
Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.

All features generated by this experiment:
Feature Export
TranscriptRegion ? 1907147
This represents 802796 unique TranscriptRegions
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
There are 47 tiling array:RNA and tiling array: RNA submissions for this experiment:
DCC id Name developmental stage antibody strain temperature tissue Embargoed until Features, GBrowse and Data Files
modENCODE_479

late embryo 20dC 6-12hrs post-fertilization N2 tiling array late Embryo 20dC 4.5 hours post-early embryo [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 39390   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_661

embryo germline precursor cells tiling array Embryo [ALL]
SS747 [ALL] / pie-1
20 degree celsius [ALL]
25 degree celsius [ALL]
germ line precursor cells (GLP) [ALL]
embargo expired
? TranscriptRegion: 43446   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_481

gonad from young adult 20dC 42hrs post-L1 N2 tiling array Young Adult 20dC 42 hr post-L1 stage larvae [ALL]
N2 [ALL]
Gonad (hermaphrodite) [ALL]
embargo expired
? TranscriptRegion: 39281   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3173

embryo AVE neurons tiling array Embryo [ALL]
NC1750 [ALL] /
target: opt-3
20 degree celsius [ALL]
25 degree celsius [ALL]
AVE neurons [ALL]
embargo expired
? TranscriptRegion: 34986   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_660

Young Adult Cephalic sheath (CEPsh) tiling array Young Adult 20dC 72hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
OS3991 [ALL] / hlh-17
20 degree celsius [ALL]
25 degree celsius [ALL]
YA-CEPsh [ALL]
embargo expired
? TranscriptRegion: 43376   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_2548

embryo pharyngeal muscle tiling array Embryo [ALL]
NC1293 [ALL] / myo-2
25 degree celsius [ALL]
pharyngeal muscle [ALL]
embargo expired
? TranscriptRegion: 41631   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_462

L2 panneural tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
SD1241 [ALL] / rgef-1
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-panneural [ALL]
embargo expired
? TranscriptRegion: 44572   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_464

L2 excretory cell tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1598 [ALL] / clh-4
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-excretory_cell [ALL]
embargo expired
? TranscriptRegion: 40301   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_476

early embryo 20dC 0-4hrs post-fertilization N2 tiling array early Embryo [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 39328   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_659

L3-L4 reference (mockIP) tiling array L3-L4 larva 20dC 22h 23dC 24hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
N2 [ALL]
25 degree celsius [ALL]
23 degree celsius [ALL]
L3-L4-reference [ALL]
embargo expired
? TranscriptRegion: 43503   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_455

embryo panneural tiling array Embryo [ALL]
NW1229 [ALL] / rgef-1
20 degree celsius [ALL]
25 degree celsius [ALL]
panneural [ALL]
embargo expired
? TranscriptRegion: 33367   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_477

L2 polyA enriched 20dC 14hrs post-L1 N2 tiling array mid-L2 stage larvae [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 44154   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


6 files Download data files
modENCODE_2500

embryo PVC neurons tiling array Embryo [ALL]
NC2015 [ALL] / glr-1
25 degree celsius [ALL]
PVC neurons (embryonic) [ALL]
embargo expired
? TranscriptRegion: 37525   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_478

male L4 25dC 36hrs post-L1 CB4689 tiling array Male larva mid-L4 25dC 30 hrs post-L1 stage larvae [ALL]
CB4689 [ALL]
embargo expired
? TranscriptRegion: 46610   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_658

L2 glutamate receptor expressing neurons tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1842 [ALL] / glr-1
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-glr [ALL]
embargo expired
? TranscriptRegion: 43506   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_463

L2 intestine tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
SD1084 [ALL] / ges-1
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-intestine [ALL]
embargo expired
? TranscriptRegion: 43753   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_2499

embryo BAG neurons tiling array Embryo [ALL]
MT17370 [ALL] / gcy-33
25 degree celsius [ALL]
BAG neurons (embryonic) [ALL]
embargo expired
? TranscriptRegion: 37378   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_466

L2 GABA neurons tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1627 [ALL] / ttr-39
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-GABA_neurons [ALL]
embargo expired
? TranscriptRegion: 40570   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_2454

L3-L4 hypodermal cells tiling array L3-L4 larva 20dC 22h 23dC 24hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1790 [ALL] / dpy-7
25 degree celsius [ALL]
23 degree celsius [ALL]
L3-L4-hypodermis [ALL]
embargo expired
? TranscriptRegion: 45352   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_465

L2 body wall muscle tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
SD1075 [ALL] / myo-3
20 degree celsius [ALL]
25 degree celsius [ALL]
body wall muscle [ALL]
embargo expired
? TranscriptRegion: 42429   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3172

embryo 0hr reference tiling array Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
25 degree celsius [ALL]
whole organism (early embryo) [ALL]
embargo expired
? TranscriptRegion: 38804   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_467

embryo dopaminergic neurons tiling array Embryo [ALL]
BY200 [ALL] / dat-1
20 degree celsius [ALL]
25 degree celsius [ALL]
dopaminergic motor neurons [ALL]
embargo expired
? TranscriptRegion: 32994   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3440

L3 L4 rectal epithelial cells tiling array L3-L4 larva 20dC 22h 23dC 24hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
CB6845 [ALL] / bus-1
23 degree celsius [ALL]
rectal epithelial cells [ALL]
embargo expired
? TranscriptRegion: 44700   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_484

L1 20dC 0hrs post-L1 N2 tiling array larva mid-L1 25dC 4.0 hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 42421   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_456

embryo all cells reference tiling array Embryo [ALL]
N2 [ALL]
20 degree celsius [ALL]
25 degree celsius [ALL]
whole organism (embryo) [ALL]
embargo expired
? TranscriptRegion: 38769   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_662

embryo hypodermal cells tiling array Embryo [ALL]
DM8001 [ALL] / dpy-7
20 degree celsius [ALL]
25 degree celsius [ALL]
hypodermal cells [ALL]
embargo expired
? TranscriptRegion: 42732   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_485

soma-only mid-L4 25dC 36hrs post-L1 JK1107 tiling array mid-L4 stage larvae [ALL]
JK1107 [ALL]
embargo expired
? TranscriptRegion: 44079   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_470

embryo body wall muscle tiling array (v2) Embryo [ALL]
PD4251 [ALL] / myo-3
20 degree celsius [ALL]
25 degree celsius [ALL]
body wall muscle [ALL]
embargo expired
? TranscriptRegion: 39556   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_458

embryo coelomocytes tiling array Embryo [ALL]
TV1112 [ALL] / unc-122
20 degree celsius [ALL]
25 degree celsius [ALL]
coelomocytes [ALL]
embargo expired
? TranscriptRegion: 35659   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3406

L2 GABA alr-1 tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC2145 [ALL] / alr-1
20 degree celsius [ALL]
L2-GABA_neurons [ALL]
embargo expired
? TranscriptRegion: 42859   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_654

embryo A-class motor neurons tiling array Embryo [ALL]
NC300 [ALL] / unc-119
20 degree celsius [ALL]
25 degree celsius [ALL]
unc-4 expressing neurons (embryonic stage) [ALL]
embargo expired
? TranscriptRegion: 35777   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_472

L2 25dC 14hrs post-L1 N2 tiling array mid-L2 stage larvae [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 41791   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_457

embryo intestine tiling array Embryo [ALL]
JR1130 [ALL] / elt-2
20 degree celsius [ALL]
25 degree celsius [ALL]
intestinal cells [ALL]
embargo expired
? TranscriptRegion: 43866   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_460

L3-L4 PVD & OLL neurons tiling array L3-L4 larva 20dC 22h 23dC 24hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1021 [ALL] / ser-2
25 degree celsius [ALL]
23 degree celsius [ALL]
L3-L4-PVD_OLL [ALL]
embargo expired
? TranscriptRegion: 42192   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3408

emb Z1 Z4 tiling array Embryo [ALL]
DZ685 [ALL] / xol-1
20 degree celsius [ALL]
Somatic gonad precursor cells Z1-Z4 (herm embryo) [ALL]
embargo expired
? TranscriptRegion: 36307   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_468

embryo GABA motor neurons tiling array Embryo [ALL]
CZ1200 [ALL] / unc-25
20 degree celsius [ALL]
25 degree celsius [ALL]
GABAergic cells [ALL]
embargo expired
? TranscriptRegion: 33725   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_469

L2 A-class neuron tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC694 [ALL] / unc-119
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-A-class [ALL]
embargo expired
? TranscriptRegion: 40265   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_459

embryo AVA neurons tiling array Embryo [ALL]
NC1749 [ALL] / rig-3
20 degree celsius [ALL]
25 degree celsius [ALL]
embryo-AVA [ALL]
embargo expired
? TranscriptRegion: 34972   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3407

EE Z1 Z4 male tiling array Embryo [ALL]
DZ683 [ALL] / tra-2
20 degree celsius [ALL]
Somatic gonad precursor cells Z1-Z4 (male embryo) [ALL]
embargo expired
? TranscriptRegion: 38037   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_474

L3 25dC 25hrs post-L1 N2 tiling array mid-L3 stage larvae [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 41734   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_657

L2 coelomocytes tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1668 [ALL] / unc-122
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-coelomocytes [ALL]
embargo expired
? TranscriptRegion: 42050   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_475

young adult 25dC 42hrs post-L1 N2 tiling array Young Adult [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 40624   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_656

Young Adult reference (mockIP) tiling array Young Adult 20dC 72hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
N2 [ALL]
20 degree celsius [ALL]
25 degree celsius [ALL]
YA-reference [ALL]
embargo expired
? TranscriptRegion: 41642   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_461

L2 reference (mockIP) tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
N2 [ALL]
20 degree celsius [ALL]
25 degree celsius [ALL]
L2-reference [ALL]
embargo expired
? TranscriptRegion: 39397   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_3405

L2 AFD tiling array mid-L2 larva 20dC [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
IX823 [ALL] / gcy-8
20 degree celsius [ALL]
AFD neurons [ALL]
embargo expired
? TranscriptRegion: 40889   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_473

L4 25dC 36hrs post-L1 N2 tiling array mid-L4 stage larvae [ALL]
N2 [ALL]
embargo expired
? TranscriptRegion: 43380   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_655

L3-L4 dopaminergic neuron tiling array L3-L4 larva 20dC 22h 23dC 24hr post-L1 stage larvae [ALL]
EZview Red ANTI-FLAG® M2 Affinity Gel [ALL] /
target: FLAG
NC1700 [ALL] / dat-1
25 degree celsius [ALL]
23 degree celsius [ALL]
L3-L4-dop [ALL]
embargo expired
? TranscriptRegion: 43468   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files