modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Identification of small RNAs in C. elegans

experiment: Identification of small RNAs in C. elegans project: The C. elegans Transcriptome PI: Robert Waterston Labs: Frank Slack
We examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, under stress conditions, and in the different sexes of C. elegans using high-throughput sequencing technology. Additionally, we identify novel small RNAs, especially novel miRNA candidates.

All features generated by this experiment:
Feature Export
MiRNA 8464 Expression Levels 5730
This represents 368 unique MiRNAs
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All 23 tracks I II III IV V X
There are 23 Computational annotation submissions for this experiment:
DCC id Name developmental stage days post-L4 strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_5393


Related to: modENCODE_4776

Heatshock spe-9 recovery stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  263   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5393


2 files Download data files
modENCODE_5377


Related to: modENCODE_6499

L3 devel miRNA annotation mid-L3 20dC 25hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  193   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5377


2 files Download data files
modENCODE_5394


Related to: modENCODE_4777

Baseline spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  246   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5394


2 files Download data files
modENCODE_5384


Related to: modENCODE_6506

Day12-spe9 aging miRNA annotation Adult 23dC 12 days post-L4 stage larvae [ALL]
12 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  232   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5384


2 files Download data files
modENCODE_5378


Related to: modENCODE_6500

L4 devel miRNA annotation mid-L4 20dC 36hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5378


2 files Download data files
modENCODE_5392


Related to: modENCODE_4775

Starvation adult spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  271   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5392


2 files Download data files
modENCODE_5379


Related to: modENCODE_6501

yAdult devel miRNA annotation young Adult 20dC 48hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5379


2 files Download data files
modENCODE_5390


Related to: modENCODE_4773

Hypoxia spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  262   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5390


2 files Download data files
modENCODE_5391


Related to: modENCODE_4774

Oxidation spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  262   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5391


2 files Download data files
modENCODE_5385


Related to: modENCODE_6507

Untreated control N2 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5385


2 files Download data files
modENCODE_5389


Related to: modENCODE_4772

Heatshock spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  244   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5389


2 files Download data files
modENCODE_5386


Related to: modENCODE_6508

Heatshock N2 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  206   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5386


2 files Download data files
modENCODE_5380


Related to: modENCODE_6502

male devel miRNA annotation young Adult Males 23dC [ALL]
CB4689 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  239   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5380


2 files Download data files
modENCODE_5387


Related to: modENCODE_6509

PA14 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  198   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5387


2 files Download data files
modENCODE_5388


Related to: modENCODE_6510

L1 arrest stress miRNA annotation L1 arrest larva 24hr post-L1 stage larvae [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  230   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5388


2 files Download data files
modENCODE_5376


Related to: modENCODE_6498

L2 devel miRNA annotation mid-L2 20dC 14hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  198   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5376


2 files Download data files
modENCODE_5375


Related to: modENCODE_6497

L1 devel miRNA annotation mid-L1 20dC 4hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  202   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5375


2 files Download data files
modENCODE_5381


Related to: modENCODE_6503

Day0-spe9 (2 reps) aging miRNA annotation young adult (23dC DAY0 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  421   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5381


4 files Download data files
modENCODE_5396


Related to: modENCODE_4779

Untreated control spe-9 12hr stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  263   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5396


2 files Download data files
modENCODE_5382


Related to: modENCODE_6504

Day5-spe9 aging miRNA annotation Adult 23dC 5 days post-L4 stage larvae [ALL]
5 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  235   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5382


2 files Download data files
modENCODE_5374


Related to: modENCODE_6496

Embryo devel miRNA annotation Embryo [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  225   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5374


2 files Download data files
modENCODE_5383


Related to: modENCODE_6505

Day8-spe9 (2 reps) aging miRNA annotation Adult spe-9(hc88) 23dC 8 days post-L4 molt [ALL]
8 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  460   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5383


4 files Download data files
modENCODE_5395


Related to: modENCODE_4778

Untreated control spe-9 6hr stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  253   export: TAB   CSV
  [find nearby features]
GBrowse tracks: miRNA_W5395


2 files Download data files