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Identification of small RNAs in C. elegans

experiment: Identification of small RNAs in C. elegans project: The C. elegans Transcriptome PI: Robert Waterston Labs: Frank Slack
We examine the changes in expression of non-coding small RNAs, including miRNAs and piRNAs/21U-RNAs, during development and aging, under stress conditions, and in the different sexes of C. elegans using high-throughput sequencing technology. Additionally, we identify novel small RNAs, especially novel miRNA candidates.

All features generated by this experiment:
Feature Export
MiRNA 8464 Expression Levels 5730
This represents 368 unique MiRNAs
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
There are 23 Computational annotation submissions for this experiment:
DCC id Name developmental stage days post-L4 strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_5393


Related to: modENCODE_4776

Heatshock spe-9 recovery stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  263   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5377


Related to: modENCODE_6499

L3 devel miRNA annotation mid-L3 20dC 25hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  193   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5394


Related to: modENCODE_4777

Baseline spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  246   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5384


Related to: modENCODE_6506

Day12-spe9 aging miRNA annotation Adult 23dC 12 days post-L4 stage larvae [ALL]
12 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  232   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5378


Related to: modENCODE_6500

L4 devel miRNA annotation mid-L4 20dC 36hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5392


Related to: modENCODE_4775

Starvation adult spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  271   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5379


Related to: modENCODE_6501

yAdult devel miRNA annotation young Adult 20dC 48hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5390


Related to: modENCODE_4773

Hypoxia spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  262   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5391


Related to: modENCODE_4774

Oxidation spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  262   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5385


Related to: modENCODE_6507

Untreated control N2 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  209   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5389


Related to: modENCODE_4772

Heatshock spe-9 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  244   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5386


Related to: modENCODE_6508

Heatshock N2 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  206   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5380


Related to: modENCODE_6502

male devel miRNA annotation young Adult Males 23dC [ALL]
CB4689 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  239   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5387


Related to: modENCODE_6509

PA14 stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  198   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5388


Related to: modENCODE_6510

L1 arrest stress miRNA annotation L1 arrest larva 24hr post-L1 stage larvae [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  230   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5376


Related to: modENCODE_6498

L2 devel miRNA annotation mid-L2 20dC 14hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  198   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5375


Related to: modENCODE_6497

L1 devel miRNA annotation mid-L1 20dC 4hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  202   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5381


Related to: modENCODE_6503

Day0-spe9 (2 reps) aging miRNA annotation young adult (23dC DAY0 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  421   export: TAB   CSV
  [find nearby features]


4 files Download data files
modENCODE_5396


Related to: modENCODE_4779

Untreated control spe-9 12hr stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  263   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5382


Related to: modENCODE_6504

Day5-spe9 aging miRNA annotation Adult 23dC 5 days post-L4 stage larvae [ALL]
5 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  235   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5374


Related to: modENCODE_6496

Embryo devel miRNA annotation Embryo [ALL]
N2 [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  225   export: TAB   CSV
  [find nearby features]


2 files Download data files
modENCODE_5383


Related to: modENCODE_6505

Day8-spe9 (2 reps) aging miRNA annotation Adult spe-9(hc88) 23dC 8 days post-L4 molt [ALL]
8 days [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  460   export: TAB   CSV
  [find nearby features]


4 files Download data files
modENCODE_5395


Related to: modENCODE_4778

Untreated control spe-9 6hr stress miRNA annotation young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
MiRNA: 368   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Expression Levels:  253   export: TAB   CSV
  [find nearby features]


2 files Download data files