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Genomic Assembly of D. melanogaster strains and cell lines

experiment: Genomic Assembly of D. melanogaster strains and cell lines project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
Rather than doing a de novo assembly, we have done a guided assembly for D. melanogaster strains and tissue culture cell lines using the dm3 reference to build a new assembly in which we change the appropriate SNPs and insert or delete sequences as appropriate for indels. Our assembly, then, is full chromosome sequence (e.g., 2R, 2L, etc.) with the changes inserted.
There are 17 Computational annotation submissions for this experiment:
DCC id Name developmental stage cell line strain Embargoed until Features, GBrowse and Data Files
modENCODE_5505


Related to: modENCODE_5498
modENCODE_5484

Genome assembly and alignment of D. melanogaster cell line D20-C2 to reference r5 ML-DmD20-c2 [ALL]
embargo expired

4 files Download data files
modENCODE_5507


Related to: modENCODE_5498
modENCODE_5486

Genome assembly and alignment of D. melanogaster cell line D4-C1 to reference r5 ML-DmD4-c1 [ALL]
embargo expired

4 files Download data files
modENCODE_5508


Related to: modENCODE_5498
modENCODE_5487

Genome assembly and alignment of D. melanogaster cell line D8 to reference r5 ML-DmD8 [ALL]
embargo expired

4 files Download data files
modENCODE_5501


Related to: modENCODE_5498
modENCODE_5480

Genome assembly and alignment of D. melanogaster cell line CME W1 Cl.8+ to reference r5 CME W1 Cl.8+ [ALL]
embargo expired

4 files Download data files
modENCODE_5517


Related to: modENCODE_5498
modENCODE_5496

Genome assembly and alignment of D. melanogaster cell line mbn2 to reference r5 mbn2 [ALL]
embargo expired

4 files Download data files
modENCODE_5503


Related to: modENCODE_5498
modENCODE_5482

Genome assembly and alignment of D. melanogaster cell line D16C3 to reference r5 ML-DmD16-c3 [ALL]
embargo expired

6 files Download data files
modENCODE_5504


Related to: modENCODE_5498
modENCODE_5483

Genome assembly and alignment of D. melanogaster cell line D17-C3 to reference r5 ML-DmD17-c3 [ALL]
embargo expired

4 files Download data files
modENCODE_5518


Related to: modENCODE_5497
modENCODE_5499

Genome assembly and alignment of D. melanogaster OreR virgin female from Bloomington stock to reference r5 adult virgin female [ALL]
Oregon-R-modENCODE [ALL]
embargo expired

4 files Download data files
modENCODE_5513


Related to: modENCODE_5498
modENCODE_5492

Genome assembly and alignment of D. melanogaster cell line S2R+ to reference r5 S2R+ [ALL]
embargo expired

6 files Download data files
modENCODE_5514


Related to: modENCODE_5498
modENCODE_5493

Genome assembly and alignment of D. melanogaster cell line S3 to reference r5 S3 [ALL]
embargo expired

4 files Download data files
modENCODE_5515


Related to: modENCODE_5498
modENCODE_5494

Genome assembly and alignment of D. melanogaster cell line Sg4 to reference r5 Sg4 [ALL]
embargo expired

4 files Download data files
modENCODE_5516


Related to: modENCODE_5498
modENCODE_5495

Genome assembly and alignment of D. melanogaster cell line W2 to reference r5 CME W2 [ALL]
embargo expired

4 files Download data files
modENCODE_5500


Related to: modENCODE_5479
modENCODE_5498

Genome assembly and alignment of D. melanogaster cell line 1182-4H to reference r5 1182-4H [ALL]
embargo expired

4 files Download data files
modENCODE_5509


Related to: modENCODE_5498
modENCODE_5488

Genome assembly and alignment of D. melanogaster cell line D9 to reference r5 ML-DmD9 [ALL]
embargo expired

6 files Download data files
modENCODE_5510


Related to: modENCODE_5498
modENCODE_5489

Genome assembly and alignment of D. melanogaster cell line L1 to reference r5 CME L1 [ALL]
embargo expired

4 files Download data files
modENCODE_5511


Related to: modENCODE_5498
modENCODE_5490

Genome assembly and alignment of D. melanogaster cell line ML-DMD20-C5 to reference r5 ML-DmD20-c5 [ALL]
embargo expired

6 files Download data files
modENCODE_5512


Related to: modENCODE_5498
modENCODE_5491

Genome assembly and alignment of D. melanogaster cell line S1 to reference r5 S1 [ALL]
embargo expired

4 files Download data files