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Genome-wide localization of essential replication initiators by ChIP-chip

experiment: Genome-wide localization of essential replication initiators by ChIP-chip project: Origins of Replication PI: David MacAlpine Labs: David MacAlpine, Terry Orr-Weaver
We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues.

All features generated by this experiment:
Feature Export
BindingSite 8927
This represents 8773 unique BindingSites
TAB CSV GFF3 (for UCSC) SEQ
ORC 8562
This represents 8407 unique ORCs
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 6 ChIP-chip submissions for this experiment:
DCC id Name developmental stage antibody strain tissue Embargoed until Features, GBrowse and Data Files
modENCODE_675

pre-RC complexes MCM cycE Kc Pan MCM2-7 Antibody [ALL] /
target: MCM2-7 complex
embargo expired
BindingSite: 3792   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: MCM_cycE


18 files Download data files
modENCODE_4717

FB CGH L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
fat body [ALL]
embargo expired
ORC: 264   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: L3_Fatbody_CGH
GEO: GSM697657
GEO: GSM697658


16 files Download data files
modENCODE_3388


Related to: modENCODE_2753
modENCODE_2754
modENCODE_2755

ORC Meta-peaks embargo expired
ORC: 7246   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Meta_Peaks


1 files Download data files
modENCODE_3441


Related to: modENCODE_710
modENCODE_711
modENCODE_709

Replication Origins Meta-peaks embargo expired
ORC: 804   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Early-Meta_Peaks


1 files Download data files
modENCODE_4718

MG CGH L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
Midgut [ALL]
embargo expired
ORC: 248   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: L3_Midgut_CGH
GEO: GSM697659
GEO: GSM697660


16 files Download data files
modENCODE_674

pre-RC complexes ORC Kc dORC2 [ALL]
target: Origin recognition complex subunit 2
embargo expired
BindingSite: 5135   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ORC2


18 files Download data files