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Developmental Time Course Transcriptional Profiling of D. melanogaster Using Roche 454 RNA-Seq

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Using Roche 454 RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley, Sue Celniker
RNA-seq analysis onthe 454 platform was performed on poly(A)+ RNA from selected developmental stages spanning the life cycle of D. melanogaster. Total RNA was isolated by the Peter Cherbas group. Isolation of poly(A)+ RNA and library construction was performed by Blanchette, Cherbas, or Roche. Libraries were sequenced at Roche or in the Blanchette lab. SFF files were generated and submitted to SRA.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 10 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_5552


Related to: modENCODE_3207
modENCODE_5538

Dm Tissue Expression third instar larvae, wandering stage, imaginal discs 454 alignments L3 stage wandering larvae [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: submission_5552.sorted


2 files Download data files
modENCODE_5547


Related to: modENCODE_5533

Dm Dev Timecourse Expression OreR AdM 454 sequence sim4 alignment r5 Adult Male [ALL]
Oregon-R-S [ALL]
embargo expired
GBrowse tracks: submission_5547.sorted


2 files Download data files
modENCODE_5550


Related to: modENCODE_577
modENCODE_5536

Dm Dev Timecourse Expression embyros, 12-14 hours after egg laying 454 alignments Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: submission_5550.sorted


2 files Download data files
modENCODE_5535


Related to: modENCODE_574
modENCODE_5549

Dm Dev Timecourse Expression mixed-stage embryos 454 sequences Mixed Embryo 0-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR035606


1 files Download data files
modENCODE_5549


Related to: modENCODE_574
modENCODE_5535

Dm Dev Timecourse Expression mixed-stage embryos 454 sequence sim4 alignment r5 Mixed Embryo 0-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: submission_5549.sorted


2 files Download data files
modENCODE_5536


Related to: modENCODE_577
modENCODE_5550

Dm Dev Timecourse Expression embyros, 12-14 hours after egg laying 454 sequences Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR070438


1 files Download data files
modENCODE_5534


Related to: modENCODE_5548

Dm Dev Timecourse Expression OreR AdF 454 sequences Adult Female [ALL]
Oregon-R-S [ALL]
embargo expired SRA: SRR069882


1 files Download data files
modENCODE_5533


Related to: modENCODE_5547

Dm Dev Timecourse Expression OreR AdM 454 sequences Adult Male [ALL]
Oregon-R-S [ALL]
embargo expired SRA: SRR069883


1 files Download data files
modENCODE_5551


Related to: modENCODE_3207
modENCODE_5537

Dm Tissue Expression mated male, eclosion + 4 days, testes 454 alignments adult male [ALL]
Oregon-R-modENCODE [ALL]
embargo expired
GBrowse tracks: submission_5551.sorted


2 files Download data files
modENCODE_5548


Related to: modENCODE_5534

Dm Dev Timecourse Expression OreR AdF 454 sequence sim4 alignment r5 Adult Female [ALL]
Oregon-R-S [ALL]
embargo expired
GBrowse tracks: submission_5548.sorted


2 files Download data files