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Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq TopHat analysis

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq TopHat analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Reads from Illumina GAIIx were aligned to the genome sequence using TopHat.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
There are 30 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4475


Related to: modENCODE_574
modENCODE_4445

Dm Dev Timecourse Expression RNA-seq em20-22hr multiply mapping reads Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E2.4475_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4490


Related to: modENCODE_574
modENCODE_4460

Dm Dev Timecourse Expression RNA-seq WPP 3days multiply mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P72.4490_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4474


Related to: modENCODE_574
modENCODE_4444

Dm Dev Timecourse Expression RNA-seq em18-20hr multiply mapping reads Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E18.4474_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4476


Related to: modENCODE_574
modENCODE_4446

Dm Dev Timecourse Expression RNA-seq em22-24hr multiply mapping reads Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E20.4476_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4489


Related to: modENCODE_574
modENCODE_4459

Dm Dev Timecourse Expression RNA-seq WPP 2days multiply mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P48.4489_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4472


Related to: modENCODE_574
modENCODE_4442

Dm Dev Timecourse Expression RNA-seq em14-16hr multiply mapping reads Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E14.4472_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4492


Related to: modENCODE_574
modENCODE_4462

Dm Dev Timecourse Expression RNA-seq WPP multiply mapping reads White prepupae (WPP) [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P0.4492_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4473


Related to: modENCODE_574
modENCODE_4443

Dm Dev Timecourse Expression RNA-seq em16-18hr multiply mapping reads Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E16.4473_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4491


Related to: modENCODE_574
modENCODE_4461

Dm Dev Timecourse Expression RNA-seq WPP 4days multiply mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P96.4491_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4480


Related to: modENCODE_574
modENCODE_4450

Dm Dev Timecourse Expression RNA-seq em8-10hr multiply mapping reads Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E8.4480_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4479


Related to: modENCODE_574
modENCODE_4449

Dm Dev Timecourse Expression RNA-seq em6-8hr multiply mapping reads Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E6.4479_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4477


Related to: modENCODE_574
modENCODE_4447

Dm Dev Timecourse Expression RNA-seq em2-4hr multiply mapping reads Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E22.4477_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4478


Related to: modENCODE_574
modENCODE_4448

Dm Dev Timecourse Expression RNA-seq em4-6hr multiply mapping reads Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E4.4478_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4483


Related to: modENCODE_574
modENCODE_4453

Dm Dev Timecourse Expression RNA-seq L3 12hr multiply mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L312.4483_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4466


Related to: modENCODE_574
modENCODE_4436

Dm Dev Timecourse Expression RNA-seq AdM Ecl 1day multiply mapping reads Adult male eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YM1.4466_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4484


Related to: modENCODE_574
modENCODE_4454

Dm Dev Timecourse Expression RNA-seq L3 PS1-2 multiply mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L313.4484_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4465


Related to: modENCODE_574
modENCODE_4435

Dm Dev Timecourse Expression RNA-seq AdF Ecl 5days multiply mapping reads Adult female eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YF5.4465_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4485


Related to: modENCODE_574
modENCODE_4455

Dm Dev Timecourse Expression RNA-seq L3 PS3-6 multiply mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L314.4485_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4481


Related to: modENCODE_574
modENCODE_4451

Dm Dev Timecourse Expression RNA-seq L1 multiply mapping reads L1 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L1.4481_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4464


Related to: modENCODE_574
modENCODE_4434

Dm Dev Timecourse Expression RNA-seq AdF Ecl 30days multiply mapping reads Adult female eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YF30.4464_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4463


Related to: modENCODE_574
modENCODE_4433

Dm Dev Timecourse Expression RNA-seq AdF Ecl 1day multiply mapping reads Adult virgin female eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YF1.4463_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4482


Related to: modENCODE_574
modENCODE_4452

Dm Dev Timecourse Expression RNA-seq L2 multiply mapping reads L2 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L2.4482_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4470


Related to: modENCODE_574
modENCODE_4440

Dm Dev Timecourse Expression RNA-seq em10-12hr multiply mapping reads Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E10.4470_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4487


Related to: modENCODE_574
modENCODE_4457

Dm Dev Timecourse Expression RNA-seq WPP 12hr multiply mapping reads White prepupae (WPP) + 12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P12.4487_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4471


Related to: modENCODE_574
modENCODE_4441

Dm Dev Timecourse Expression RNA-seq em12-14hr multiply mapping reads Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E12.4471_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4488


Related to: modENCODE_574
modENCODE_4458

Dm Dev Timecourse Expression RNA-seq WPP 24hr multiply mapping reads White prepupae (WPP) + 24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: P24.4488_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4469


Related to: modENCODE_574
modENCODE_4439

Dm Dev Timecourse Expression RNA-seq em0-2h multiply mapping reads Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: E0.4469_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4468


Related to: modENCODE_574
modENCODE_4438

Dm Dev Timecourse Expression RNA-seq AdM Ecl 5days multiply mapping reads Adult male eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YM5.4468_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4486


Related to: modENCODE_574
modENCODE_4456

Dm Dev Timecourse Expression RNA-seq L3 PS7-9 multiply mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: L315.4486_merged_hits.sam.bam.sorted


1 files Download data files
modENCODE_4467


Related to: modENCODE_574
modENCODE_4437

Dm Dev Timecourse Expression RNA-seq AdM Ecl 30days multiply mapping reads Adult male eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: YM30.4467_merged_hits.sam.bam.sorted


1 files Download data files