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Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq SPA+Bowtie analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Unstranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster r5 genome using Bowtie (Langmead, 2010) and SPA (Graveley et al., 2011)
There are 30 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4768


Related to: modENCODE_574
modENCODE_4460

Dm Developmental Timecourse Expression RNA-seq WPP 3days uniquely mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4752


Related to: modENCODE_574
modENCODE_4444

Dm Developmental Timecourse Expression RNA-seq em18-20hr uniquely mapping reads Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4767


Related to: modENCODE_574
modENCODE_4459

Dm Developmental Timecourse Expression RNA-seq WPP 2days uniquely mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4754


Related to: modENCODE_574
modENCODE_4446

Dm Developmental Timecourse Expression RNA-seq em22-24hr uniquely mapping reads Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4753


Related to: modENCODE_574
modENCODE_4445

Dm Developmental Timecourse Expression RNA-seq em20-22hr uniquely mapping reads Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4770


Related to: modENCODE_574
modENCODE_4462

Dm Developmental Timecourse Expression RNA-seq WPP uniquely mapping reads White prepupae (WPP) [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4750


Related to: modENCODE_574
modENCODE_4442

Dm Developmental Timecourse Expression RNA-seq em14-16hr uniquely mapping reads Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4749


Related to: modENCODE_574
modENCODE_4441

Dm Developmental Timecourse Expression RNA-seq em12-14hr uniquely mapping reads Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4769


Related to: modENCODE_574
modENCODE_4461

Dm Developmental Timecourse Expression RNA-seq WPP 4days uniquely mapping reads Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4751


Related to: modENCODE_574
modENCODE_4443

Dm Developmental Timecourse Expression RNA-seq em16-18hr uniquely mapping reads Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4758


Related to: modENCODE_574
modENCODE_4450

Dm Developmental Timecourse Expression RNA-seq em8-10hr uniquely mapping reads Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4759


Related to: modENCODE_574
modENCODE_4451

Dm Developmental Timecourse Expression RNA-seq L1 uniquely mapping reads L1 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4755


Related to: modENCODE_574
modENCODE_4447

Dm Developmental Timecourse Expression RNA-seq em2-4hr uniquely mapping reads Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4757


Related to: modENCODE_574
modENCODE_4449

Dm Developmental Timecourse Expression RNA-seq em6-8hr uniquely mapping reads Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4756


Related to: modENCODE_574
modENCODE_4448

Dm Developmental Timecourse Expression RNA-seq em4-6hr uniquely mapping reads Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4761


Related to: modENCODE_574
modENCODE_4453

Dm Developmental Timecourse Expression RNA-seq L3 12hr uniquely mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4744


Related to: modENCODE_574
modENCODE_4436

Dm Developmental Timecourse Expression RNA-seq AdM Ecl 1days uniquely mapping reads Adult male eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4762


Related to: modENCODE_574
modENCODE_4454

Dm Developmental Timecourse Expression RNA-seq L3 PS1-2 uniquely mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4743


Related to: modENCODE_574
modENCODE_4435

Dm Developmental Timecourse Expression RNA-seq AdF Ecl 5days uniquely mapping reads Adult female eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4742


Related to: modENCODE_574
modENCODE_4434

Dm Developmental Timecourse Expression RNA-seq AdF Ecl 30days uniquely mapping reads Adult female eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4741


Related to: modENCODE_574
modENCODE_4433

Dm Developmental Timecourse Expression RNA-seq AdF Ecl 1days uniquely mapping reads Adult virgin female eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4760


Related to: modENCODE_574
modENCODE_4452

Dm Developmental Timecourse Expression RNA-seq L2 uniquely mapping reads L2 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4748


Related to: modENCODE_574
modENCODE_4440

Dm Developmental Timecourse Expression RNA-seq em10-12hr uniquely mapping reads Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4765


Related to: modENCODE_574
modENCODE_4457

Dm Developmental Timecourse Expression RNA-seq WPP 12hr uniquely mapping reads White prepupae (WPP) + 12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4766


Related to: modENCODE_574
modENCODE_4458

Dm Developmental Timecourse Expression RNA-seq WPP 24hr uniquely mapping reads White prepupae (WPP) + 24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4747


Related to: modENCODE_574
modENCODE_4439

Dm Developmental Timecourse Expression RNA-seq em0-2h uniquely mapping reads Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4763


Related to: modENCODE_574
modENCODE_4455

Dm Developmental Timecourse Expression RNA-seq L3 PS3-6 uniquely mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4746


Related to: modENCODE_574
modENCODE_4438

Dm Developmental Timecourse Expression RNA-seq AdM Ecl 5days uniquely mapping reads Adult male eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4764


Related to: modENCODE_574
modENCODE_4456

Dm Developmental Timecourse Expression RNA-seq L3 PS7-9 uniquely mapping reads L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files
modENCODE_4745


Related to: modENCODE_574
modENCODE_4437

Dm Developmental Timecourse Expression RNA-seq AdM Ecl 30days uniquely mapping reads Adult male eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired

1 files Download data files