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Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Using Illumina poly(A)+ RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Brenton Graveley
RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Total RNA was isolated by the Peter Cherbas group. Isolation of poly(A)+ RNA and library construction were performed in the Brenton Graveley lab. Libraries were distributed among 5 labs in the Drosophila Transcriptome group for sequencing. The Susan Celniker lab performed paired-end sequencing exclusively (2x76 nt) . The Brenton Graveley, Tom Gingeras and Michael Brent labs performed single-end sequencing exclusively (1x76 nt). The Brian Oliver lab performed both single- and paired-end sequencing. All labs used the same Illumina GAII platform and called bases using the Illumina processing pipeline. Fastq files were generated using pipeline version 1.3 before 5/07/09 and using version 1.4 after that date.
There are 30 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4461


Related to: modENCODE_574
modENCODE_4491
modENCODE_4769

Dm Dev Timecourse Expression RNA-seq WPP 4days sequences Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023609
SRA: SRR023653
SRA: SRR023723
SRA: SRR023735
SRA: SRR023740
...All entries in public repositories generated by this submission

Download data files
modENCODE_4445


Related to: modENCODE_574
modENCODE_4475
modENCODE_4753

Dm Dev Timecourse Expression RNA-seq em20-22hr sequences Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023506
SRA: SRR023665
SRA: SRR023684
SRA: SRR023718
SRA: SRR023728
...All entries in public repositories generated by this submission

Download data files
modENCODE_4460


Related to: modENCODE_574
modENCODE_4490
modENCODE_4768

Dm Dev Timecourse Expression RNA-seq WPP 3days sequences Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023738
SRA: SRR023744
SRA: SRR023748
SRA: SRR023783
SRA: SRR024216
...All entries in public repositories generated by this submission

Download data files
modENCODE_4446


Related to: modENCODE_574
modENCODE_4476
modENCODE_4754

Dm Dev Timecourse Expression RNA-seq em22-24hr sequences Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023538
SRA: SRR023685
SRA: SRR023711
SRA: SRR023733
SRA: SRR023834
...All entries in public repositories generated by this submission

Download data files
modENCODE_4442


Related to: modENCODE_574
modENCODE_4472
modENCODE_4750

Dm Dev Timecourse Expression RNA-seq em14-16hr sequences Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023540
SRA: SRR023641
SRA: SRR023725
SRA: SRR023734
SRA: SRR023736
...All entries in public repositories generated by this submission

Download data files
modENCODE_4444


Related to: modENCODE_574
modENCODE_4474
modENCODE_4752

Dm Dev Timecourse Expression RNA-seq em18-20hr sequences Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023503
SRA: SRR023599
SRA: SRR023673
SRA: SRR023682
SRA: SRR023686
...All entries in public repositories generated by this submission

Download data files
modENCODE_4462


Related to: modENCODE_574
modENCODE_4492
modENCODE_4770

Dm Dev Timecourse Expression RNA-seq WPP sequences White prepupae (WPP) [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023695
SRA: SRR023704
SRA: SRR023784
SRA: SRR023837
SRA: SRR026432
...All entries in public repositories generated by this submission

Download data files
modENCODE_4443


Related to: modENCODE_574
modENCODE_4473
modENCODE_4751

Dm Dev Timecourse Expression RNA-seq em16-18hr sequences Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023600
SRA: SRR023707
SRA: SRR023715
SRA: SRR023720
SRA: SRR023751
...All entries in public repositories generated by this submission

Download data files
modENCODE_4450


Related to: modENCODE_574
modENCODE_4758
modENCODE_4480

Dm Dev Timecourse Expression RNA-seq em8-10hr sequences Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023549
SRA: SRR023596
SRA: SRR023603
SRA: SRR023657
SRA: SRR023701
...All entries in public repositories generated by this submission

Download data files
modENCODE_4433


Related to: modENCODE_574
modENCODE_4741
modENCODE_4463

Dm Dev Timecourse Expression RNA-seq AdF Ecl 1days sequences Adult virgin female eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023595
SRA: SRR023662
SRA: SRR023680
SRA: SRR023702
SRA: SRR023737
...All entries in public repositories generated by this submission

Download data files
modENCODE_4451


Related to: modENCODE_574
modENCODE_4759
modENCODE_4481

Dm Dev Timecourse Expression RNA-seq L1 sequences L1 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023597
SRA: SRR023646
SRA: SRR023661
SRA: SRR023666
SRA: SRR023706
...All entries in public repositories generated by this submission

Download data files
modENCODE_4448


Related to: modENCODE_574
modENCODE_4756
modENCODE_4478

Dm Dev Timecourse Expression RNA-seq em4-6hr sequences Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023539
SRA: SRR023669
SRA: SRR023696
SRA: SRR023746
SRA: SRR023836
...All entries in public repositories generated by this submission

Download data files
modENCODE_4447


Related to: modENCODE_574
modENCODE_4755
modENCODE_4477

Dm Dev Timecourse Expression RNA-seq em2-4hr sequences Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023502
SRA: SRR023660
SRA: SRR023705
SRA: SRR023722
SRA: SRR023745
...All entries in public repositories generated by this submission

Download data files
modENCODE_4449


Related to: modENCODE_574
modENCODE_4757
modENCODE_4479

Dm Dev Timecourse Expression RNA-seq em6-8hr sequences Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023504
SRA: SRR023654
SRA: SRR023668
SRA: SRR023688
SRA: SRR023691
...All entries in public repositories generated by this submission

Download data files
modENCODE_4436


Related to: modENCODE_574
modENCODE_4744
modENCODE_4466

Dm Dev Timecourse Expression RNA-seq AdM Ecl 1days sequences Adult male eclosion+1 day [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023543
SRA: SRR023648
SRA: SRR023664
SRA: SRR023678
SRA: SRR023741
...All entries in public repositories generated by this submission

Download data files
modENCODE_4454


Related to: modENCODE_574
modENCODE_4484
modENCODE_4762

Dm Dev Timecourse Expression RNA-seq L3 PS1-2 sequences L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023546
SRA: SRR023608
SRA: SRR023638
SRA: SRR023640
SRA: SRR023697
...All entries in public repositories generated by this submission

Download data files
modENCODE_4455


Related to: modENCODE_574
modENCODE_4485
modENCODE_4763

Dm Dev Timecourse Expression RNA-seq L3 PS3-6 sequences L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023505
SRA: SRR023676
SRA: SRR023683
SRA: SRR023690
SRA: SRR023692
...All entries in public repositories generated by this submission

Download data files
modENCODE_4452


Related to: modENCODE_574
modENCODE_4760
modENCODE_4482

Dm Dev Timecourse Expression RNA-seq L2 sequences L2 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023542
SRA: SRR023670
SRA: SRR023719
SRA: SRR023761
SRA: SRR023824
...All entries in public repositories generated by this submission

Download data files
modENCODE_4435


Related to: modENCODE_574
modENCODE_4743
modENCODE_4465

Dm Dev Timecourse Expression RNA-seq AdF Ecl 5days sequences Adult female eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023547
SRA: SRR023607
SRA: SRR023645
SRA: SRR023651
SRA: SRR023717
...All entries in public repositories generated by this submission

Download data files
modENCODE_4434


Related to: modENCODE_574
modENCODE_4742
modENCODE_4464

Dm Dev Timecourse Expression RNA-seq AdF Ecl 30days sequences Adult female eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023548
SRA: SRR023598
SRA: SRR023674
SRA: SRR023681
SRA: SRR023712
...All entries in public repositories generated by this submission

Download data files
modENCODE_4453


Related to: modENCODE_574
modENCODE_4483
modENCODE_4761

Dm Dev Timecourse Expression RNA-seq L3 12hr sequences L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023507
SRA: SRR023649
SRA: SRR023677
SRA: SRR023731
SRA: SRR023760
...All entries in public repositories generated by this submission

Download data files
modENCODE_4458


Related to: modENCODE_574
modENCODE_4488
modENCODE_4766

Dm Dev Timecourse Expression RNA-seq WPP 24hr sequences White prepupae (WPP) + 24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023541
SRA: SRR023656
SRA: SRR023708
SRA: SRR023756
SRA: SRR023830
...All entries in public repositories generated by this submission

Download data files
modENCODE_4441


Related to: modENCODE_574
modENCODE_4471
modENCODE_4749

Dm Dev Timecourse Expression RNA-seq em12-14hr sequences Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023602
SRA: SRR023643
SRA: SRR023703
SRA: SRR023724
SRA: SRR023832
...All entries in public repositories generated by this submission

Download data files
modENCODE_4439


Related to: modENCODE_574
modENCODE_4469
modENCODE_4747

Dm Dev Timecourse Expression RNA-seq em0-2h sequences Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023199
SRA: SRR023659
SRA: SRR023663
SRA: SRR023671
SRA: SRR023747
...All entries in public repositories generated by this submission

Download data files
modENCODE_4459


Related to: modENCODE_574
modENCODE_4489
modENCODE_4767

Dm Dev Timecourse Expression RNA-seq WPP 2days sequences Pupae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023667
SRA: SRR023721
SRA: SRR023743
SRA: SRR023785
SRA: SRR023829
...All entries in public repositories generated by this submission

Download data files
modENCODE_4440


Related to: modENCODE_574
modENCODE_4470
modENCODE_4748

Dm Dev Timecourse Expression RNA-seq em10-12hr sequences Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023604
SRA: SRR023644
SRA: SRR023694
SRA: SRR023727
SRA: SRR023831
...All entries in public repositories generated by this submission

Download data files
modENCODE_4456


Related to: modENCODE_574
modENCODE_4486
modENCODE_4764

Dm Dev Timecourse Expression RNA-seq L3 PS7-9 sequences L3 stage larvae [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023729
SRA: SRR023739
SRA: SRR023782
SRA: SRR023865
SRA: SRR026433
...All entries in public repositories generated by this submission

Download data files
modENCODE_4437


Related to: modENCODE_574
modENCODE_4745
modENCODE_4467

Dm Dev Timecourse Expression RNA-seq AdM Ecl 30days sequences Adult male eclosion+30 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023601
SRA: SRR023650
SRA: SRR023698
SRA: SRR023714
SRA: SRR023752
...All entries in public repositories generated by this submission

Download data files
modENCODE_4457


Related to: modENCODE_574
modENCODE_4487
modENCODE_4765

Dm Dev Timecourse Expression RNA-seq WPP 12hr sequences White prepupae (WPP) + 12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023544
SRA: SRR023639
SRA: SRR023647
SRA: SRR023689
SRA: SRR023716
...All entries in public repositories generated by this submission

Download data files
modENCODE_4438


Related to: modENCODE_574
modENCODE_4468
modENCODE_4746

Dm Dev Timecourse Expression RNA-seq AdM Ecl 5days sequences Adult male eclosion+5 days [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR023550
SRA: SRR023605
SRA: SRR023606
SRA: SRR023642
SRA: SRR023658
...All entries in public repositories generated by this submission

Download data files