modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq TopHat analysis

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq TopHat analysis project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
Strand-specific RNA-seq analysis was performed on 12 total RNA samples in a time course spanning the development of the D. melanogaster embryo, from 0-2hr through 22-24hr in two-hour windows. Reads from Applied Biosystems SOLiD sequencing were aligned to the genome sequence using TopHat.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 12 Computational annotation submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4607


Related to: modENCODE_574
modENCODE_4595

Dm em0-2hr-212-SOLiD-tophat Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em0-2hr.bam.bam.sorted
SRA: SRR034220


1 files Download data files
modENCODE_4614


Related to: modENCODE_574
modENCODE_4602

Dm em22-24hr-280-SOLiD-tophat Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em22-24hr.bam.bam.sorted
SRA: SRR034231


1 files Download data files
modENCODE_4615


Related to: modENCODE_574
modENCODE_4603

Dm em2-4hr-220-SOLiD-tophat Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em2-4hr.bam.bam.sorted
SRA: SRR034221


1 files Download data files
modENCODE_4612


Related to: modENCODE_574
modENCODE_4600

Dm em18-20hr-268-SOLiD-tophat Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em18-20hr.bam.bam.sorted
SRA: SRR034229


1 files Download data files
modENCODE_4613


Related to: modENCODE_574
modENCODE_4601

Dm em20-22hr-276-SOLiD-tophat Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em20-22hr.bam.bam.sorted
SRA: SRR034230


1 files Download data files
modENCODE_4611


Related to: modENCODE_574
modENCODE_4599

Dm em16-18hr-260-SOLiD-tophat Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em16-18hr.bam.bam.sorted
SRA: SRR034228


1 files Download data files
modENCODE_4618


Related to: modENCODE_574
modENCODE_4606

Dm em8-10hr-238-SOLiD-tophat Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em8-10hr.bam.bam.sorted
SRA: SRR034224


1 files Download data files
modENCODE_4610


Related to: modENCODE_574
modENCODE_4598

Dm em14-16hr-258-SOLiD-tophat Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em14-16hr.bam.bam.sorted
SRA: SRR034227


1 files Download data files
modENCODE_4609


Related to: modENCODE_574
modENCODE_4597

Dm em12-14hr-250-SOLiD-tophat Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em12-14hr.bam.bam.sorted
SRA: SRR034226


1 files Download data files
modENCODE_4616


Related to: modENCODE_574
modENCODE_4604

Dm em4-6hr-226-SOLiD-tophat Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em4-6hr.bam.bam.sorted
SRA: SRR034222


1 files Download data files
modENCODE_4608


Related to: modENCODE_574
modENCODE_4596

Dm em10-12hr-244-SOLiD-tophat Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em10-12hr.bam.bam.sorted
SRA: SRR034225


1 files Download data files
modENCODE_4617


Related to: modENCODE_574
modENCODE_4605

Dm em6-8hr-232-SOLiD-tophat Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: SOLiD_em6-8hr.bam.bam.sorted
SRA: SRR034223


1 files Download data files