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Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
Strand-specific RNA-seq analysis was performed on 12 total RNA samples in a time course spanning the development of the D. melanogaster embryo, from 0-2hr through 22-24hr in two-hour windows. RNA was isolated by the Peter Cherbas group. Library construction, RNA-seq producution (50 nt reads), data processing and genomic alignment were performed by Applied Biosystems using the SOLID platform and software.
There are 24 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4602


Related to: modENCODE_574
modENCODE_4614

Dm em22-24hr-280 SOLiD seq Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034231


1 files Download data files
modENCODE_2685


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 18-20hr embryo, SOLiD total RNA-seq Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015650


2 files Download data files
modENCODE_2686


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 20-22hr embryo, SOLiD total RNA-seq Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015651


2 files Download data files
modENCODE_4603


Related to: modENCODE_574
modENCODE_4615

Dm em2-4hr-220 SOLiD seq Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034221


1 files Download data files
modENCODE_2687


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 22-24hr embryo, SOLiD total RNA-seq Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015652


2 files Download data files
modENCODE_4600


Related to: modENCODE_574
modENCODE_4612

Dm em18-20hr-268 SOLiD seq Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034229


1 files Download data files
modENCODE_4601


Related to: modENCODE_574
modENCODE_4613

Dm em20-22hr-276 SOLiD seq Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034230


1 files Download data files
modENCODE_4606


Related to: modENCODE_574
modENCODE_4618

Dm em8-10hr-238 SOLiD seq Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034224


1 files Download data files
modENCODE_2679


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 6-8hr embryo, SOLiD total RNA-seq Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015644


2 files Download data files
modENCODE_2680


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 8-10hr embryo, SOLiD total RNA-seq Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015645


2 files Download data files
modENCODE_4604


Related to: modENCODE_574
modENCODE_4616

Dm em4-6hr-226 SOLiD seq Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034222


1 files Download data files
modENCODE_2681


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 10-12hr embryo, SOLiD total RNA-seq Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015646


2 files Download data files
modENCODE_2682


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 12-14hr embryo, SOLiD total RNA-seq Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015647


2 files Download data files
modENCODE_4605


Related to: modENCODE_574
modENCODE_4617

Dm em6-8hr-232 SOLiD seq Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034223


1 files Download data files
modENCODE_2683


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 14-16hr embryo, SOLiD total RNA-seq Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015648


2 files Download data files
modENCODE_2684


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 16-18hr embryo, SOLiD total RNA-seq Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015649


2 files Download data files
modENCODE_4595


Related to: modENCODE_574
modENCODE_4607

Dm em0-2hr-212 SOLiD seq Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034220


1 files Download data files
modENCODE_2678


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 4-6hr embryo, SOLiD total RNA-seq Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015643


2 files Download data files
modENCODE_2676


Related to: modENCODE_574
modENCODE_4329
modENCODE_4330
modENCODE_4327
modENCODE_4328
modENCODE_4333
modENCODE_4334
modENCODE_4331
modENCODE_4332
modENCODE_4320
modENCODE_4322
modENCODE_4325
modENCODE_4326
modENCODE_4323
modENCODE_4324
modENCODE_4321
modENCODE_4346
modENCODE_4345
modENCODE_4344
modENCODE_4343
modENCODE_4349
modENCODE_4057
modENCODE_4348
modENCODE_4347
modENCODE_4338
modENCODE_4337
modENCODE_4336
modENCODE_4335
modENCODE_4342
modENCODE_4341
modENCODE_4340
modENCODE_4339

D.melanogaster 0-2hr embryo, SOLiD total RNA-seq Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015641


2 files Download data files
modENCODE_2677


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 2-4hr embryo, SOLiD total RNA-seq Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRX015642


2 files Download data files
modENCODE_4599


Related to: modENCODE_574
modENCODE_4611

Dm em16-18hr-260 SOLiD seq Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034228


1 files Download data files
modENCODE_4598


Related to: modENCODE_574
modENCODE_4610

Dm em14-16hr-258 SOLiD seq Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034227


1 files Download data files
modENCODE_4597


Related to: modENCODE_574
modENCODE_4609

Dm em12-14hr-250 SOLiD seq Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034226


1 files Download data files
modENCODE_4596


Related to: modENCODE_574
modENCODE_4608

Dm em10-12hr-244 SOLiD seq Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034225


1 files Download data files