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Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq

experiment: Developmental Time Course Transcriptional Profiling of D. melanogaster Embryo Using SOLiD Stranded Total RNA-Seq project: The Drosophila Transcriptome PI: Sue Celniker Labs: Sue Celniker
Strand-specific RNA-seq analysis was performed on 12 total RNA samples in a time course spanning the development of the D. melanogaster embryo, from 0-2hr through 22-24hr in two-hour windows. RNA was isolated by the Peter Cherbas group. Library construction, RNA-seq producution (50 nt reads), data processing and genomic alignment were performed by Applied Biosystems using the SOLID platform and software.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 24 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_4602


Related to: modENCODE_574
modENCODE_4614

Dm em22-24hr-280 SOLiD seq Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034231


1 files Download data files
modENCODE_2685


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 18-20hr embryo, SOLiD total RNA-seq Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_18-20hr
SRA: SRX015650


2 files Download data files
modENCODE_2686


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 20-22hr embryo, SOLiD total RNA-seq Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_20-22hr
SRA: SRX015651


2 files Download data files
modENCODE_4603


Related to: modENCODE_574
modENCODE_4615

Dm em2-4hr-220 SOLiD seq Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034221


1 files Download data files
modENCODE_2687


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 22-24hr embryo, SOLiD total RNA-seq Embryo 22-24 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_22-24hr
SRA: SRX015652


2 files Download data files
modENCODE_4600


Related to: modENCODE_574
modENCODE_4612

Dm em18-20hr-268 SOLiD seq Embryo 18-20 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034229


1 files Download data files
modENCODE_4601


Related to: modENCODE_574
modENCODE_4613

Dm em20-22hr-276 SOLiD seq Embryo 20-22 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034230


1 files Download data files
modENCODE_4606


Related to: modENCODE_574
modENCODE_4618

Dm em8-10hr-238 SOLiD seq Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034224


1 files Download data files
modENCODE_2679


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 6-8hr embryo, SOLiD total RNA-seq Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_6-8hr
SRA: SRX015644


2 files Download data files
modENCODE_2680


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 8-10hr embryo, SOLiD total RNA-seq Embryo 8-10 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_8-10hr
SRA: SRX015645


2 files Download data files
modENCODE_4604


Related to: modENCODE_574
modENCODE_4616

Dm em4-6hr-226 SOLiD seq Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034222


1 files Download data files
modENCODE_2681


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 10-12hr embryo, SOLiD total RNA-seq Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_10-12hr
SRA: SRX015646


2 files Download data files
modENCODE_2682


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 12-14hr embryo, SOLiD total RNA-seq Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_12-14hr
SRA: SRX015647


2 files Download data files
modENCODE_4605


Related to: modENCODE_574
modENCODE_4617

Dm em6-8hr-232 SOLiD seq Embryo 6-8 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034223


1 files Download data files
modENCODE_2683


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 14-16hr embryo, SOLiD total RNA-seq Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_14-16hr
SRA: SRX015648


2 files Download data files
modENCODE_2684


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 16-18hr embryo, SOLiD total RNA-seq Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_16-18hr
SRA: SRX015649


2 files Download data files
modENCODE_4595


Related to: modENCODE_574
modENCODE_4607

Dm em0-2hr-212 SOLiD seq Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034220


1 files Download data files
modENCODE_2678


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 4-6hr embryo, SOLiD total RNA-seq Embryo 4-6 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_4-6hr
SRA: SRX015643


2 files Download data files
modENCODE_2676


Related to: modENCODE_574
modENCODE_4329
modENCODE_4330
modENCODE_4327
modENCODE_4328
modENCODE_4333
modENCODE_4334
modENCODE_4331
modENCODE_4332
modENCODE_4320
modENCODE_4322
modENCODE_4325
modENCODE_4326
modENCODE_4323
modENCODE_4324
modENCODE_4321
modENCODE_4346
modENCODE_4345
modENCODE_4344
modENCODE_4343
modENCODE_4349
modENCODE_4057
modENCODE_4348
modENCODE_4347
modENCODE_4338
modENCODE_4337
modENCODE_4336
modENCODE_4335
modENCODE_4342
modENCODE_4341
modENCODE_4340
modENCODE_4339

D.melanogaster 0-2hr embryo, SOLiD total RNA-seq Embryo 0-2 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_0-2hr
SRA: SRX015641


2 files Download data files
modENCODE_2677


Related to: modENCODE_574
modENCODE_4057

D.melanogaster 2-4hr embryo, SOLiD total RNA-seq Embryo 2-4 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired
GBrowse tracks: embryo_2-4hr
SRA: SRX015642


2 files Download data files
modENCODE_4599


Related to: modENCODE_574
modENCODE_4611

Dm em16-18hr-260 SOLiD seq Embryo 16-18 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034228


1 files Download data files
modENCODE_4598


Related to: modENCODE_574
modENCODE_4610

Dm em14-16hr-258 SOLiD seq Embryo 14-16 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034227


1 files Download data files
modENCODE_4597


Related to: modENCODE_574
modENCODE_4609

Dm em12-14hr-250 SOLiD seq Embryo 12-14 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034226


1 files Download data files
modENCODE_4596


Related to: modENCODE_574
modENCODE_4608

Dm em10-12hr-244 SOLiD seq Embryo 10-12 h [ALL]
yellow cinnabar brown speck [ALL]
embargo expired SRA: SRR034225


1 files Download data files