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Definition of comprehensive set of C. remanei transcripts and expression for various stages and conditions

experiment: Definition of comprehensive set of C. remanei transcripts and expression for various stages and conditions project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. remani. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 10 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_6619

Cremanei Dev Timecourse Expression SB146 YAF RNA-seq sequences and alignment SB146 Young Adult Female [ALL]
SB146 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR357258
SRA: SRR357259
SRA: SRR357260
SRA: SRR357261
SRA: SRR357262


4 files Download data files
modENCODE_6620

Cremanei Dev Timecourse Expression SB146 YAM RNA-seq sequences and alignment SB146 Young Adult Male [ALL]
SB146 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR357263
SRA: SRR357264
SRA: SRR357265
SRA: SRR357266
SRA: SRR357267


4 files Download data files
modENCODE_4707

C. remanei SB146 Early Embryo confirmed sites embargo expired
GBrowse tracks: INTRONS_4707
POLYA_4707
SLSITES_4707


3 files Download data files
modENCODE_4711

C. remanei SB146 L4 replicate 2 confirmed sites embargo expired
GBrowse tracks: INTRONS_4711
POLYA_4711
SLSITES_4711


3 files Download data files
modENCODE_4710

C. remanei SB146 L4 replicate 1 confirmed sites embargo expired
GBrowse tracks: INTRONS_4710
POLYA_4710
SLSITES_4710


3 files Download data files
modENCODE_4709

C. remanei SB146 L2 replicate 2 confirmed sites embargo expired
GBrowse tracks: INTRONS_4709
POLYA_4709
SLSITES_4709


3 files Download data files
modENCODE_4708

C. remanei SB146 L2 replicate 1 confirmed sites embargo expired
GBrowse tracks: INTRONS_4708
SLSITES_4708


3 files Download data files
modENCODE_6618

Cremanei Dev Timecourse Expression SB146 L4 RNA-seq sequences and alignment SB146 L4 larva [ALL]
SB146 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR149193
SRA: SRR357248
SRA: SRR357249
SRA: SRR357250


8 files Download data files
modENCODE_4713

C. remanei SB146 Young Adult Male confirmed sites embargo expired
GBrowse tracks: INTRONS_4713
POLYA_4713
SLSITES_4713


3 files Download data files
modENCODE_4712

C. remanei SB146 Young Adult Female confirmed sites embargo expired
GBrowse tracks: INTRONS_4712
POLYA_4712
SLSITES_4712


3 files Download data files