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Definition of comprehensive set of C. japonica transcripts and expression for various stages and conditions

experiment: Definition of comprehensive set of C. japonica transcripts and expression for various stages and conditions project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. japonica. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 9 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_4702

C. japonica DF5081 L4 confirmed sites embargo expired
GBrowse tracks: INTRONS_4702
POLYA_4702
SLSITES_4702


3 files Download data files
modENCODE_6615

Cjaponica Dev Timecourse Expression DF5081 AD-M RNA-seq sequences and alignment DF5081 Adult Male [ALL]
DF5081 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR351188
SRA: SRR351189


4 files Download data files
modENCODE_4701

C. japonica DF5081 L2 confirmed sites embargo expired
GBrowse tracks: INTRONS_4701
SLSITES_4701


3 files Download data files
modENCODE_6614

Cjaponica Dev Timecourse Expression DF5081 L4 RNA-seq sequences and alignment DF5081 L4 larva [ALL]
DF5081 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR351186
SRA: SRR351187


4 files Download data files
modENCODE_4700

C. japonica DF5081 Early Embryo confirmed sites embargo expired
GBrowse tracks: INTRONS_4700
POLYA_4700
SLSITES_4700


3 files Download data files
modENCODE_6613

Cjaponica Dev Timecourse Expression DF5081 L2 RNA-seq sequences and alignment DF5081 L2 larva [ALL]
DF5081 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR351184
SRA: SRR351185


4 files Download data files
modENCODE_6612

Cjaponica Dev Timecourse Expression DF5081 EE RNA-seq sequences and alignment DF5081 Early Embryo [ALL]
DF5081 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR351192
SRA: SRR351193


4 files Download data files
modENCODE_4699

C. japonica DF5081 Adult Male confirmed sites embargo expired
GBrowse tracks: INTRONS_4699
POLYA_4699
SLSITES_4699


3 files Download data files
modENCODE_6611

Cjaponica Dev Timecourse Expression DF5081 AD-F RNA-seq sequences and alignment DF5081 Adult Female [ALL]
DF5081 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR351190
SRA: SRR351191


4 files Download data files