DCC id
Name
developmental stage
strain
temperature
Embargoed until
Features, GBrowse and Data Files
modENCODE_2861
L2 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L2 stage larvae
[ALL]
mid-L4 stage larvae
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2862
L3 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
mid-L3 stage larvae
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2863
L4 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_3526
RNAseq - N2 EE-2cap5 alignments
early Embryo capture EE-2cap5
[ALL]
N2
[ALL]
25 degree celsius
[ALL]
embargo expired
SRA:
SRR089795
SRA:
SRR089796
3 files
Download data files
modENCODE_2851
Young Adult N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
Young Adult
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2855
early embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
early Embryo
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2856
embryo him-8 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
Embryo him-8(e1480) 20dC
[ALL]
CB1489
[ALL]
embargo expired
13 files
Download data files
modENCODE_2857
late embryo N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
late Embryo 20dC 4.5 hours post-early embryo
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2858
L1 lin-35(n745) integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, and wormbase splice junctions
larva mid-L1 25dC 4.0 hrs post-L1 stage larvae
[ALL]
lin-35(n745) larva mid-L1 25dC 4.0 hrs post-L1 stage larvae
[ALL]
MT10430
[ALL]
embargo expired
13 files
Download data files
modENCODE_2859
L4 male integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
Male larva mid-L4 25dC 30 hrs post-L1 stage larvae
[ALL]
CB4689
[ALL]
embargo expired
13 files
Download data files
modENCODE_2860
L1 N2 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
mid-L4 stage larvae
[ALL]
larva mid-L1 25dC 4.0 hrs post-L1 stage larvae
[ALL]
N2
[ALL]
embargo expired
13 files
Download data files
modENCODE_2850
Adult spe-9 integrated transcripts from RNA-seq, mRNA/EST, RTPCR, mass-spec, polyA sites, and SLs
Adult spe-9(hc88) 23dC 8 days post-L4 molt
[ALL]
BA671
[ALL]
embargo expired
13 files
Download data files
modENCODE_4543
Related to: modENCODE_3909
C. elegans him-8(e1489) L4 Male combined replicates confirmed sites
Male larva mid-L4 25dC 30 hrs post-L1 stage larvae
[ALL]
Male larva mid-L4 L4MALE5
[ALL]
N2
[ALL]
20 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_4520
Related to: modENCODE_4152
C. elegans him-8(e1489) Embryo Male replicate 1 confirmed sites
Embryo
[ALL]
CB4689
[ALL]
20 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_4152
Related to: modENCODE_4520
RNA-seq C. elegans him-8 Embryo Males replicate 1 sequence & alignments
Embryo
[ALL]
CB4689
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR027904
SRA:
SRR027905
4 files
Download data files
modENCODE_3908
Related to: modENCODE_4538
RNA-seq C. elegans JK1107 Soma L4 sequence & alignments
L4 soma JK1107 no DNaseI
[ALL]
L4 soma JK1107 no DNaseI L4JK1107soma-2
[ALL]
JK1107
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR031122
SRA:
SRR031123
SRA:
SRR089799
8 files
Download data files
modENCODE_4538
Related to: modENCODE_3908
C. elegans JK1107(glp-1(q224)) L4 combined replicates confirmed sites
L4 soma JK1107 no DNaseI
[ALL]
L4 soma JK1107 no DNaseI L4JK1107soma-2
[ALL]
JK1107
[ALL]
20 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_3909
Related to: modENCODE_4543
RNA-seq C. elegans N2 L4 Male sequence & alignments
Male larva mid-L4 25dC 30 hrs post-L1 stage larvae
[ALL]
Male larva mid-L4 L4MALE5
[ALL]
N2
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR016684
SRA:
SRR016685
SRA:
SRR016686
SRA:
SRR124273
SRA:
SRR124274
8 files
Download data files
modENCODE_3883
RNA-seq C. elegans N2 Late Embryo sequence & alignments
early Embryo EE-2
[ALL]
late Embryo LE-1
[ALL]
N2
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR016676
SRA:
SRR016677
SRA:
SRR016678
SRA:
SRR016687
SRA:
SRR124255
...All entries in public repositories generated by this submission
8 files
Download data files
modENCODE_3877
C. elegans N2 Early Embryo (50hrs post L1, 120 minutes)
N2 EE 50-120
[ALL]
N2
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR317082
3 files
Download data files
modENCODE_2934
Related to: modENCODE_515
modENCODE_445
modENCODE_446
modENCODE_447
modENCODE_448
modENCODE_2304
modENCODE_2935
Aggregate C. elegans transcript creation from 19 stages
Mixed Larval Stages Grown for 4-5 Days
[ALL]
N2
[ALL]
embargo expired
33 files
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modENCODE_3531
RNAseq - N2 LE-2cap6 alignments
N2 LE-2cap6
[ALL]
N2
[ALL]
25 degree celsius
[ALL]
embargo expired
SRA:
SRR136599
3 files
Download data files
modENCODE_3733
RNAseq - C. elegans N2 hand picked 4 cell embryosDSN-Negative-Positive
N2 EE 50-120
[ALL]
N2
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR317082
3 files
Download data files
modENCODE_2647
RNAseq - 0911 aggregate fourteen stages - non-redundant exons
embargo expired
16 files
Download data files
modENCODE_4566
C. elegans N2 Early Embryo (50hrs post L1, +570 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4565
C. elegans N2 Early Embryo (50hrs post L1, +540 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4568
C. elegans N2 Early Embryo (50hrs post L1, +60 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4567
C. elegans N2 Early Embryo (50hrs post L1, +600 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4570
C. elegans N2 Early Embryo (50hrs post L1, +660 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4569
C. elegans N2 Early Embryo (50hrs post L1, +630 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4572
C. elegans N2 Early Embryo (50hrs post L1, +720 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4571
C. elegans N2 Early Embryo (50hrs post L1, +690 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4574
C. elegans N2 L1 replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4573
C. elegans N2 Early Embryo (50hrs post L1, +90 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4576
C. elegans N2 L3 replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4575
C. elegans N2 L2 replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4578
C. elegans N2 L4 rRNA removed array captured confirmed sites
embargo expired
3 files
Download data files
modENCODE_4577
C. elegans N2 L4 array captured confirmed sites
embargo expired
3 files
Download data files
modENCODE_4580
C. elegans N2 Late Embryo array captured confirmed sites
embargo expired
3 files
Download data files
modENCODE_4579
C. elegans N2 Late Embryo replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4548
C. elegans N2 Early Embryo array captured confirmed sites
embargo expired
3 files
Download data files
modENCODE_4549
C. elegans N2 Early Embryo (50hrs post L1, +0 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4550
C. elegans N2 Early Embryo (50hrs post L1, +120 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4551
C. elegans N2 Early Embryo (50hrs post L1, +150 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4552
C. elegans N2 Early Embryo (50hrs post L1, +180 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4553
C. elegans N2 Early Embryo (50hrs post L1, +210 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4554
C. elegans N2 Early Embryo (50hrs post L1, +240 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4555
C. elegans N2 Early Embryo (50hrs post L1, +270 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4556
C. elegans N2 Early Embryo (50hrs post L1, +30 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_2935
Related to: modENCODE_2934
RNAseq - 1003 aggregate 19 stages - non-redundant exons
embargo expired
2 files
Download data files
modENCODE_4557
C. elegans N2 Early Embryo (50hrs post L1, +300 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4558
C. elegans N2 Early Embryo (50hrs post L1, +330 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4559
C. elegans N2 Early Embryo (50hrs post L1, +360 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4561
C. elegans N2 Early Embryo (50hrs post L1, +420 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4562
C. elegans N2 Early Embryo (50hrs post L1, +450 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4563
C. elegans N2 Early Embryo (50hrs post L1, +480 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4564
C. elegans N2 Early Embryo (50hrs post L1, +510 min) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4719
RNA-seq C. elegans daf-2 Dauer Entry combined replicates sequence & alignments
dauer entry daf-2(el370) 25dC 48 hrs post-L1 stage larvae
[ALL]
CB1370
[ALL]
25 degree celsius
[ALL]
embargo expired
SRA:
SRR027189
SRA:
SRR027190
SRA:
SRR124275
SRA:
SRR124276
SRA:
SRR358688
...All entries in public repositories generated by this submission
19 files
Download data files
modENCODE_4583
C. elegans N2 Young Adult rRNA removed replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4585
C. elegans Pharyngeal Muscle (OK0640) confirmed sites
embargo expired
3 files
Download data files
modENCODE_4581
C. elegans N2 Young Adult replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4582
C. elegans N2 Young Adult rRNA removed replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4592
C. elegans N2 Adults Serratia macescens Db10 E. coli control confirmed sites
embargo expired
3 files
Download data files
modENCODE_4593
C. elegans N2 Young Adult replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4586
C. elegans N2 Adults Photorhabdus luminescens 24 hour exposure confirmed sites
embargo expired
3 files
Download data files
modENCODE_4591
C. elegans N2 Adults Serratia macescens Db10 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4594
C. elegans N2 Young Adult combined replicates confirmed sites
embargo expired
3 files
Download data files
modENCODE_4503
C. elegans daf-2(e1370) Dauer replicate 4 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4502
C. elegans daf-2(e1370) Dauer replicate 3 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4504
Related to: modENCODE_4692
C. elegans daf-2(e1370) Dauer combined replicates confirmed sites
dauer daf-2(el370) 25dC 91hrs post-L1 stage larvae
[ALL]
CB1370
[ALL]
25 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_4501
C. elegans daf-2(e1370) Dauer replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4500
C. elegans daf-2(e1370) Dauer replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4507
C. elegans daf-2(e1370) Dauer Entry replicate 3 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4506
C. elegans daf-2(e1370) Dauer Entry replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4510
C. elegans daf-2(e1370) Dauer Exit replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4508
C. elegans daf-2(e1370) Dauer Entry replicate 4 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4505
C. elegans daf-2(e1370) Dauer Entry replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4692
Related to: modENCODE_4504
RNA-seq C. elegans daf-2(e1370) Dauer combined replicates sequences and alignments
dauer daf-2(el370) 25dC 91hrs post-L1 stage larvae
[ALL]
CB1370
[ALL]
25 degree celsius
[ALL]
embargo expired
SRA:
SRR027187
SRA:
SRR027188
SRA:
SRR360120
SRA:
SRR360121
SRA:
SRR360122
...All entries in public repositories generated by this submission
15 files
Download data files
modENCODE_4584
Related to: modENCODE_4168
C. elegans fer-15(b26) Adult Drechmeria coniospora E. coli control confirmed sites
Young Adult
[ALL]
DH26
[ALL]
25 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_4153
Related to: modENCODE_4521
RNA-seq C. elegans him-8 Embryo Males replicate 2 sequence & alignments
Embryo
[ALL]
CB4689
[ALL]
20 degree celsius
[ALL]
embargo expired
SRA:
SRR089797
SRA:
SRR125491
4 files
Download data files
modENCODE_4521
Related to: modENCODE_4153
C. elegans him-8(e1489) Embryo Male replicate 2 confirmed sites
Embryo
[ALL]
CB4689
[ALL]
20 degree celsius
[ALL]
embargo expired
3 files
Download data files
modENCODE_4168
Related to: modENCODE_4584
RNA-seq C. elegans Drechmeria coniospora E. coli control sequence & alignments
Young Adult
[ALL]
DH26
[ALL]
25 degree celsius
[ALL]
embargo expired
SRA:
SRR089352
SRA:
SRR089353
SRA:
SRR089354
4 files
Download data files
modENCODE_4494
C. elegans spe-9(hc88) Young Adult confirmed Sites
embargo expired
3 files
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modENCODE_4493
C. elegans N2 Early Embryo confirmed sites
embargo expired
3 files
Download data files
modENCODE_4537
C. elegans JK1107(glp-1(q224)) L4 replicate 2 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4536
C. elegans JK1107(glp-1(q224)) L4 replicate 1 confirmed sites
embargo expired
3 files
Download data files
modENCODE_4535
C. elegans N2 L4 replicate 2 confirmed sites
embargo expired
3 files
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modENCODE_4534
C. elegans N2 L4 replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4533
C. elegans N2 L3 combined replicates confirmed sites
embargo expired
3 files
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modENCODE_4532
C. elegans N2 L3 replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4531
C. elegans N2 L2 combined replicates confirmed sites
embargo expired
3 files
Download data files
modENCODE_4547
C. elegans N2 Early Embryo replicate 2 confirmed sites
embargo expired
3 files
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modENCODE_4546
C. elegans lin-35(n745) L1 confirmed sites
embargo expired
3 files
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modENCODE_4544
C. elegans N2 Late Embryo replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4542
C. elegans him-8(e1489) L4 Male replicate array captured confirmed sites
embargo expired
3 files
Download data files
modENCODE_4541
C. elegans him-8(e1489) L4 Male replicate 2 confirmed sites
embargo expired
3 files
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modENCODE_4540
C. elegans him-8(e1489) L4 Male replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4519
C. elegans N2 Enterococcus faecalis 24 hour exposure confirmed sites
embargo expired
3 files
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modENCODE_4522
C. elegans him-8(e1489) Embryo Male combined replicates confirmed sites
embargo expired
3 files
Download data files
modENCODE_4516
C. elegans fer-15(b26) Adult Drechmeria coniospora 12 hour exposure confirmed sites
embargo expired
3 files
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modENCODE_4517
C. elegans N2 4 cell embryos DSN-Negative-Positive confirmed sites
embargo expired
3 files
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modENCODE_4513
C. elegans daf-2(e1370) Dauer Exit replicate 4 confirmed sites
embargo expired
3 files
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modENCODE_4515
C. elegans fer-15(b26) Adult Drechmeria coniospora 5 hour exposure confirmed sites
embargo expired
3 files
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modENCODE_4511
C. elegans daf-2(e1370) Dauer Exit replicate 2 confirmed sites
embargo expired
3 files
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modENCODE_4512
C. elegans daf-2(e1370) Dauer Exit replicate 3 confirmed sites
embargo expired
3 files
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modENCODE_4529
C. elegans N2 L1 combined replicates confirmed sites
embargo expired
3 files
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modENCODE_4530
C. elegans N2 L2 replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4527
C. elegans N2 L1 replicate 1 confirmed sites
embargo expired
3 files
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modENCODE_4528
C. elegans lin-35(n745) L1 array captured confirmed sites
embargo expired
3 files
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modENCODE_4525
C. elegans fer-15(b26) L4 Haptocillium sphaerosporum confirmed sites
embargo expired
3 files
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modENCODE_4526
C. elegans fer-15(b26) L4 Haptocillium sphaerosporum E. coli control confirmed sites
embargo expired
3 files
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modENCODE_4523
C. elegans fer-15(b26) Adult Harposporium exposure confirmed sites
embargo expired
3 files
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modENCODE_4524
C. elegans fer-15(b26) Adult Harposporium E. coli control confirmed sites
embargo expired
3 files
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