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Definition of comprehensive set of C. briggsae transcripts and expression for various stages and conditions

experiment: Definition of comprehensive set of C. briggsae transcripts and expression for various stages and conditions project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. briggsae. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.
There are 15 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_4498

C. briggsae AF16 Mixed stages confirmed sites embargo expired

3 files Download data files
modENCODE_6532

Cbriggsae Dev Timecourse Expression AF16 YA RNA-seq sequences and alignment AF16 Young Adult [ALL]
AF16 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR327331
SRA: SRR327332
SRA: SRR351176
SRA: SRR351177
SRA: SRR359085
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_4497

C. briggsae AF16 L4 replicate 1 confirmed sites embargo expired

3 files Download data files
modENCODE_6529

Cbriggsae Dev Timecourse Expression AF16 L2 RNA-seq sequences and alignment AF16 L2 larva [ALL]
AF16 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR149189
SRA: SRR351180
SRA: SRR351181
SRA: SRR359084


8 files Download data files
modENCODE_6528

Cbriggsae Dev Timecourse Expression AF16 EE RNA-seq sequences and alignment AF16 EE [ALL]
AF16 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR327138
SRA: SRR327139
SRA: SRR351178
SRA: SRR351179
SRA: SRR359073
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_4694

C. briggsae AF16 L2 replicate 2 confirmed sites embargo expired

3 files Download data files
modENCODE_6531

Cbriggsae Dev Timecourse Expression AF16 Mx RNA-seq sequences and alignment AF16 Mixed-stage [ALL]
AF16 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR158087
SRA: SRR158088
SRA: SRR158089


4 files Download data files
modENCODE_4495

C. briggsae AF16 Early Embryo replicate 1 confirmed sites embargo expired

3 files Download data files
modENCODE_4695

C. briggsae AF16 L4 replicate 2 confirmed sites embargo expired

3 files Download data files
modENCODE_4496

C. briggsae AF16 L2 replicate 1 confirmed sites embargo expired

3 files Download data files
modENCODE_4693

C. briggsae AF16 Early Embryo replicate 2 confirmed sites embargo expired

3 files Download data files
modENCODE_4698

C. japonica DF5081 Adult Female confirmed sites embargo expired

3 files Download data files
modENCODE_6530

Cbriggsae Dev Timecourse Expression AF16 L4 RNA-seq sequences and alignment AF16 L4 larva [ALL]
AF16 [ALL]
20 degree celsius [ALL]
embargo expired SRA: SRR149191
SRA: SRR351182
SRA: SRR351183


8 files Download data files
modENCODE_4696

C. briggsae AF16 Young Adult replicate 1 confirmed sites embargo expired

3 files Download data files
modENCODE_4697

C. briggsae AF16 Young Adult replicate 2 confirmed sites embargo expired

3 files Download data files