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Definition of comprehensive set of C. brenneri transcripts and expression for various stages and conditions

experiment: Definition of comprehensive set of C. brenneri transcripts and expression for various stages and conditions project: The C. elegans Transcriptome PI: Robert Waterston Labs: Robert Waterston
Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. brenneri. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 7 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_4703

C. brenneri PB2801 Early Embryo confirmed sites embargo expired
GBrowse tracks: INTRONS_4703
POLYA_4703
SLSITES_4703


3 files Download data files
modENCODE_4706

C. brenneri PB2801 Young Adult Male confirmed sites embargo expired
GBrowse tracks: INTRONS_4706
POLYA_4706
SLSITES_4706


3 files Download data files
modENCODE_4705

C. brenneri PB2801 Young Adult Female confirmed sites embargo expired
GBrowse tracks: INTRONS_4705
POLYA_4705
SLSITES_4705


3 files Download data files
modENCODE_4704

C. brenneri PB2801 L4 confirmed sites embargo expired
GBrowse tracks: INTRONS_4704
POLYA_4704
SLSITES_4704


3 files Download data files
modENCODE_6527

PB2801 YAM Final Alignment Redo PB2801 YAM-1 [ALL]
PB2801 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6527.sorted.bam
SRA: SRR352237
SRA: SRR352238
SRA: SRR352239
SRA: SRR352240
SRA: SRR359075


4 files Download data files
modENCODE_6524

Cbrenneri Dev Timecourse Expression PB2801 EE RNA-seq sequences and alignment PB2801 EE-1 [ALL]
PB2801 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6524.sorted.bam
SRA: SRR352227
SRA: SRR352228
SRA: SRR352229


4 files Download data files
modENCODE_6526

Cbrenneri Dev Timecourse Expression PB2801 YAF RNA-seq sequences and alignment PB2801 YAF-1 [ALL]
PB2801 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6526.sorted.bam
SRA: SRR352233
SRA: SRR352234
SRA: SRR352235
SRA: SRR352236
SRA: SRR359072


4 files Download data files