modENCODE |  Help
Hide

The table data can be sorted according to the content of a given column, just click on the column header.

D. melanogaster Small RNAs

experiment: D. melanogaster Small RNAs project: The Drosophila Transcriptome PI: Sue Celniker Labs: Tom Gingeras
Data contained under this heading were generated on D. melanogaster Small RNAs less than 200 nucleotides in length. There are several varieties available. Some datasets are from compartmentalized cell lines (Whole Cell, Cytoplasm and Nuclear). They can also be generated with different protocols aimed at enriching for RNAs that are either capped at their 5' ends or 5' monophosphates. The cap-enriched and 5' monophosphate D. melanogaster small RNA libraries were generated in biological duplicate. Each library was mapped independently using STAR (Gingeras Lab) to the dm3 assembly without U-extra.
There are 30 RNA-seq submissions for this experiment:
DCC id Name cell line compartment Embargoed until Features, GBrowse and Data Files
modENCODE_4233


Related to: modENCODE_4346
modENCODE_3971

Cl.8 Cyto CIP-TAP smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350800
SRA: SRR350803
Download data files
modENCODE_4221


Related to: modENCODE_4334
modENCODE_3971

S2-DRSC Cyto CIP-TAP smallRNA-seq sequencing S2-DRSC [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350830
SRA: SRR350832
Download data files
modENCODE_4228


Related to: modENCODE_4341
modENCODE_3971

BG3 Cyto Untreated smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350818
SRA: SRR350821
Download data files
modENCODE_4227


Related to: modENCODE_4340
modENCODE_3971

BG3 Cyto CIP-TAP smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350812
SRA: SRR350815
Download data files
modENCODE_4222


Related to: modENCODE_4335
modENCODE_3971

S2-DRSC Cyto Untreated smallRNA-seq sequencing S2-DRSC [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350824
SRA: SRR350827
Download data files
modENCODE_4215


Related to: modENCODE_4328
modENCODE_3971

S2R+ Cyto CIP-TAP smallRNA-seq sequencing S2R+ [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350838
SRA: SRR350841
Download data files
modENCODE_4209


Related to: modENCODE_4322
modENCODE_3971

Kc167 Cyto CIP-TAP smallRNA-seq sequencing Kc167 [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350850
SRA: SRR350855
Download data files
modENCODE_4234


Related to: modENCODE_4347
modENCODE_3971

Cl.8 Cyto Untreated smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350806
SRA: SRR350809
Download data files
modENCODE_4216


Related to: modENCODE_4329
modENCODE_3971

S2R+ Cyto Untreated smallRNA-seq sequencing S2R+ [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350844
SRA: SRR350847
Download data files
modENCODE_4210


Related to: modENCODE_4323
modENCODE_3971

Kc167 Cyto Untreated smallRNA-seq sequencing Kc167 [ALL]
cytoplasm [ALL]
embargo expired SRA: SRR350836
SRA: SRR350853
Download data files
modENCODE_4224


Related to: modENCODE_4337
modENCODE_3970

S2-DRSC Nuclear Untreated smallRNA-seq sequencing S2-DRSC [ALL]
nucleus [ALL]
embargo expired SRA: SRR350823
SRA: SRR350826
Download data files
modENCODE_4218


Related to: modENCODE_4331
modENCODE_3970

S2R+ Nuclear Untreated smallRNA-seq sequencing S2R+ [ALL]
nucleus [ALL]
embargo expired SRA: SRR350843
SRA: SRR350846
Download data files
modENCODE_4230


Related to: modENCODE_4343
modENCODE_3970

BG3 Nuclear Untreated smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
nucleus [ALL]
embargo expired SRA: SRR350817
SRA: SRR350820
Download data files
modENCODE_4223


Related to: modENCODE_4336
modENCODE_3970

S2-DRSC Nuclear CIP-TAP smallRNA-seq sequencing S2-DRSC [ALL]
nucleus [ALL]
embargo expired SRA: SRR350829
SRA: SRR350831
Download data files
modENCODE_4211


Related to: modENCODE_4324
modENCODE_3970

Kc167 Nuclear CIP-TAP smallRNA-seq sequencing Kc167 [ALL]
nucleus [ALL]
embargo expired SRA: SRR350849
SRA: SRR350854
Download data files
modENCODE_4217


Related to: modENCODE_4330
modENCODE_3970

S2R+ Nuclear CIP-TAP smallRNA-seq sequencing S2R+ [ALL]
nucleus [ALL]
embargo expired SRA: SRR350837
SRA: SRR350840
Download data files
modENCODE_4229


Related to: modENCODE_4342
modENCODE_3970

BG3 Nuclear CIP-TAP smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
nucleus [ALL]
embargo expired SRA: SRR350811
SRA: SRR350814
Download data files
modENCODE_4235


Related to: modENCODE_4348
modENCODE_3970

Cl.8 Nuclear CIP-TAP smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
nucleus [ALL]
embargo expired SRA: SRR350799
SRA: SRR350802
Download data files
modENCODE_4236


Related to: modENCODE_4349
modENCODE_3970

Cl.8 Nuclear Untreated smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
nucleus [ALL]
embargo expired SRA: SRR350805
SRA: SRR350808
Download data files
modENCODE_4212


Related to: modENCODE_4325
modENCODE_3970

Kc167 Nuclear Untreated smallRNA-seq sequencing Kc167 [ALL]
nucleus [ALL]
embargo expired SRA: SRR350852
SRA: SRR350857
Download data files
modENCODE_4232


Related to: modENCODE_4345
modENCODE_3972

Cl.8 Whole cell Untreated smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
cell [ALL]
embargo expired SRA: SRR350807
SRA: SRR350810
Download data files
modENCODE_4226


Related to: modENCODE_4339
modENCODE_3972

BG3 Whole cell Untreated smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
cell [ALL]
embargo expired SRA: SRR350819
SRA: SRR350822
Download data files
modENCODE_4220


Related to: modENCODE_4333
modENCODE_3972

S2-DRSC Whole cell Untreated smallRNA-seq sequencing S2-DRSC [ALL]
cell [ALL]
embargo expired SRA: SRR350825
SRA: SRR350828
Download data files
modENCODE_4231


Related to: modENCODE_4344
modENCODE_3972

Cl.8 Whole cell CIP-TAP smallRNA-seq sequencing CME W1 Cl.8+ [ALL]
cell [ALL]
embargo expired SRA: SRR350801
SRA: SRR350804
Download data files
modENCODE_4225


Related to: modENCODE_4338
modENCODE_3972

BG3 Whole cell CIP-TAP smallRNA-seq sequencing ML-DmBG3-c2 [ALL]
cell [ALL]
embargo expired SRA: SRR350813
SRA: SRR350816
Download data files
modENCODE_4219


Related to: modENCODE_4332
modENCODE_3972

S2-DRSC Whole cell CIP-TAP smallRNA-seq sequencing S2-DRSC [ALL]
cell [ALL]
embargo expired SRA: SRR350833
SRA: SRR350834
Download data files
modENCODE_4214


Related to: modENCODE_4327
modENCODE_3972

S2R+ Whole cell Untreated smallRNA-seq sequencing S2R+ [ALL]
cell [ALL]
embargo expired SRA: SRR350845
SRA: SRR350848
Download data files
modENCODE_4213


Related to: modENCODE_4326
modENCODE_3972

S2R+ Whole cell CIP-TAP smallRNA-seq sequencing S2R+ [ALL]
cell [ALL]
embargo expired SRA: SRR350839
SRA: SRR350842
Download data files
modENCODE_4208


Related to: modENCODE_4321
modENCODE_3972

Kc167 Whole cell Untreated smallRNA-seq sequencing Kc167 [ALL]
cell [ALL]
embargo expired SRA: SRR350835
SRA: SRR350858
Download data files
modENCODE_4207


Related to: modENCODE_4320
modENCODE_3972

Kc167 Whole cell CIP-TAP smallRNA-seq sequencing Kc167 [ALL]
cell [ALL]
embargo expired SRA: SRR350851
SRA: SRR350856
Download data files