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Chromatin ChIP-chip

experiment: Chromatin ChIP-chip project: Chromatin Function PI: Jason Lieb Labs: Arshad Desai, Jason Lieb, Julie Ahringer, Susan Strome
The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. 126 strategically selected targets include key histone modifications, histone variants, RNA polymerase II isoforms, dosage-compensation proteins, centromere components, homolog-pairing facilitators, recombination markers, and nuclear-envelope constituents. We will integrate information generated with existing knowledge on the biology of the targets, perform ChIP-chip analysis on mutant and RNAi extracts lacking selected target proteins, use extrachromosomal arrays to assess the ability of candidate identified sequence motifs to recruit targets in vivo, identify tissue-specific patterns of selected targets, and create integrated, quantitative models of transcription and whole-chromosome functions.

All features generated by this experiment:
Feature Export
BindingSite ? 333604
This represents 311986 unique BindingSites
TAB CSV GFF3 (for UCSC) SEQ
PolypeptideDomain 27525
This represents 27404 unique PolypeptideDomains
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
All entries in public repositories generated by this experiment
There are 113 ChIP-chip submissions for this experiment:
DCC id Name developmental stage antibody strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_3435

JL00001 DPY27 N2 EEMB Early Stage Embryos [ALL]
JL00001_DPY27 [ALL] / dpy-27
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 11156   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
JL00001_DPY27_N2_EEMB_2_OID29991_peaks.gff: 3329   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
JL00001_DPY27_N2_EEMB_1_OID28862+2_OID29991_cat.gff: 5578   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
JL00001_DPY27_N2_EEMB_1_OID28862_peaks.gff: 2249   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_3434

DISN147 H4K20ME1 001 N2 EEMB Early Stage Embryos [ALL]
DISN147_H4K20me1:001 [ALL] /
target: H4K20me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 1394   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_EEMB_1_OID28964_peaks.gff: 5   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_EEMB_2_OID29991_peaks.gff: 850   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_EEMB_1_OID28964+2_OID29991_peaks.gff: 539   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_202

NA MES4FLAG EEMB Early Stage Embryos [ALL]
MES4FLAG [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562591
GEO: GSM562592
GEO: GSM562593
GEO: GSM562594
GEO: GSM562595
...All entries in public repositories generated by this submission



14 files Download data files
modENCODE_2312

Histone H3 N2 EEMB 1 (AR0144 H3144 N2 EEMB) Early Stage Embryos [ALL]
C. elegans AR0144_H3 rabbit serum [ALL] /
target: histone H3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562719
GEO: GSM562720
GEO: GSM562721


9 files Download data files
modENCODE_3432

SDQ2357 AMA1 N2 MXEMB Mixed Stage Embryos [ALL]
SDQ2357-AMA1 [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5480   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2357_AMA1_N2_MXEMB_1_EE4_DS_peaks.gff: 1651   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2357_AMA1_N2_MXEMB_1_EE1+1_EE4_DS+1_EE5_peaks.gff: 2068   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2357_AMA1_N2_MXEMB_1_EE5_peaks.gff: 1417   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2357_AMA1_N2_MXEMB_1_EE1_peaks.gff: 344   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


13 files Download data files
modENCODE_338

SDC-2 N2 Mixed Embryos (JL00005 SDC2 N2 MXEMB) Mixed Stage Embryos [ALL]
JL0005_SDC2 [ALL] / sdc-2
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 64   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM562597
GEO: GSM562598
GEO: GSM562599


10 files Download data files
modENCODE_2338

Histone H3K36me2 N2 EEMB (AB9049 H3K36ME2608457 N2 EEMB) Early Stage Embryos [ALL]
AB9049 H3K36me2:608457 [ALL] /
target: H3K36me2
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562724


3 files Download data files
modENCODE_2339

Histone H3K9me3 N2 EEMB 2 (AB8898 H3K9ME3339901 N2 EEMB) Early Stage Embryos [ALL]
AB8898 H3K9ME3:339901 [ALL] /
target: H3K9me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562725


3 files Download data files
modENCODE_336

MIX-1 N2 Mixed Embryos (JL00004 MIX1 N2 MXEMB) Mixed Stage Embryos [ALL]
JL0004_MIX1 [ALL] / mix-1
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM409467
GEO: GSM409468
GEO: GSM409469


9 files Download data files
modENCODE_2313

Histone H3 N2 EEMB 2 (AB1791 H3609253 N2 EEMB) Early Stage Embryos [ALL]
C. elegans AB1791_H3 rabbit polyclonal antibody [ALL] /
target: Histone H3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562722
GEO: GSM562723


6 files Download data files
modENCODE_630

DPY-27 N2 L4(JL00001 DPY27 N2 L4) L4 Larval Stage [ALL]
JL00001_DPY27 [ALL] / dpy-27
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562608
GEO: GSM562609
GEO: GSM562610
GEO: GSM562611


12 files Download data files
modENCODE_334

DPY-26 N2 Mixed Embryos (JL00003 DPY26 N2 MXEMB) Mixed Stage Embryos [ALL]
JL00003_DPY26 [ALL] / dpy-26
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM403972
GEO: GSM403973
GEO: GSM403974


9 files Download data files
modENCODE_3548

WA30534819 H3K4ME3 N2 L1 s3 L1 Larva Stage [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2908   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811288


4 files Download data files
modENCODE_3546

WA30534819 H3K4ME3 N2 EEMB s1 Early Stage Embryos [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3736   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811286


4 files Download data files
modENCODE_2398


Related to: modENCODE_2540

Histone H3K9me3 N2 L3 (HK00009 H3K9ME32F3 N2 L3) L3 Larval Stage [ALL]
HK00009 H3K9me3:2F3 [ALL] /
target: H3K9me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562730
GEO: GSM562731


6 files Download data files
modENCODE_3547

WA30534819 H3K4ME3 N2 LTEMB s2 DevStageWorm:Late Embryos:JL:1 [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3557   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811287


4 files Download data files
modENCODE_3544

ABAB817 8WG16 N2 EEMB Early Stage Embryos [ALL]
ABAB817_8WG16:346588 [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 13504   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_EEMB_4+5+6_peaks.gff: 3535   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_EEMB_4_peaks.gff: 396   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_EEMB_5_peaks.gff: 5476   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_EEMB_6_peaks.gff: 4097   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


13 files Download data files
modENCODE_3545

ABAB817 8WG16 N2 LTEMB DevStageWorm:Late Embryos:JL:1 [ALL]
ABAB817_8WG16:346588 [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5876   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_LTEMB_1_peaks.gff: 950   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_LTEMB_2_peaks.gff: 2583   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_LTEMB_1+2+3_peaks.gff: 1373   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
ABAB817_8WG16_N2_LTEMB_3_peaks.gff: 970   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


13 files Download data files
modENCODE_2382

Negative control Antibody N2 EEMB (SS00050 IGG N2 EEMB) Early Stage Embryos [ALL]
C. elegans SS00050_IGG rabbit polyclonal antibody [ALL] /
target: na
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562728
GEO: GSM562729


6 files Download data files
modENCODE_2364

Negative control No Antibody N2 EEMB (NA N2 EEMB) Early Stage Embryos [ALL]
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562726
GEO: GSM562727


6 files Download data files
modENCODE_3543

SDQ0804 HCP3 N2 LTEMB DevStageWorm:Late Embryos:JL:1 [ALL]
SDQ0804_HCP-3 [ALL] / hcp-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
PolypeptideDomain: 9484   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM1255289
GEO: GSM1255290


9 files Download data files
modENCODE_3542

OD00079 HCP3 N2 LTEMB DevStageWorm:Late Embryos:JL:1 [ALL]
OD00079_HCP3 [ALL] / hcp-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
PolypeptideDomain: 8773   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM1255287
GEO: GSM1255288


9 files Download data files
modENCODE_3540

OD00079 HCP3 N2 EEMB Early Stage Embryos [ALL]
OD00079_HCP3 [ALL] / hcp-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
PolypeptideDomain: 9268   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM1255285
GEO: GSM1255286


9 files Download data files
modENCODE_2406


Related to: modENCODE_2540

Histone H3K9me2 N2 L3 (HK00008 H3K9ME26D11 N2 L3) L3 Larval Stage [ALL]
HK00008_H3K9me2:6D11 [ALL] /
target: H3K9me2
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562740
GEO: GSM562741


6 files Download data files
modENCODE_2402


Related to: modENCODE_2540

Histone H3K4me2 N2 L3 (WA30834809 H3K4ME2 N2 L3) L3 Larval Stage [ALL]
WA308-34809_H3K4me2 [ALL] /
target: H3K4me2
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562738
GEO: GSM562739


6 files Download data files
modENCODE_3538

DISN147 H4K20ME1 001 N2 L3 L3 Larval Stage [ALL]
DISN147_H4K20me1:001 [ALL] /
target: H4K20me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 14383   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_L3_1+2_peaks.gff: 4980   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_L3_2_peaks.gff: 4797   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
DISN147_H4K20ME1_001_N2_L3_1_peaks.gff: 4606   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_2401


Related to: modENCODE_2540

Histone H3K36me3 N2 L3 (HK00001 H3K36ME313C9 N2 L3) L3 Larval Stage [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562736
GEO: GSM562737


6 files Download data files
modENCODE_3439

SDQ2330 LIN15B N2 LTEMB DevStageWorm:Late Embryos:JL:1 [ALL]
SDQ2330-LIN15B [ALL] / lin-15B
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 9588   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2330_LIN15B_N2_LTEMB_1_peaks.gff: 4415   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2330_LIN15B_N2_LTEMB_1+2_peaks.gff: 3840   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2330_LIN15B_N2_LTEMB_2_peaks.gff: 1333   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_2400


Related to: modENCODE_2540

Histone H3K27me3 N2 L3 (HK00013 H3K27ME31E7 N2 L3) L3 Larval Stage [ALL]
HK00013 H3K27me3:1E7:JL:1 [ALL] /
target: H3K27me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562734
GEO: GSM562735


6 files Download data files
modENCODE_2399


Related to: modENCODE_2540

Histone H3K36me2 N2 L3 (HK00012 H3K36ME22C3 N2 L3) L3 Larval Stage [ALL]
HK00012_H3K36me2:2C3 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562732
GEO: GSM562733


6 files Download data files
modENCODE_3438

SDQ2324 HPL2 N2 LTEMB DevStageWorm:Late Embryos:JL:1 [ALL]
SDQ2324-HPL2 [ALL] / hpl-2
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 6178   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2324_HPL2_N2_LTEMB_1+2_peaks.gff: 3152   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ2324_HPL2_N2_LTEMB_1_peaks.gff: 3026   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


8 files Download data files
modENCODE_2540


Related to: modENCODE_2398
modENCODE_2399
modENCODE_2400
modENCODE_2401
modENCODE_2402
modENCODE_2406
modENCODE_2407
modENCODE_2409

Ahringer L3 Worm Samples 2 L3 Larval Stage [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired Download data files
modENCODE_2442

Histone H3K79me2 N2 EEMB (AB3594 H3K79ME2346021 N2 EEMB) Early Stage Embryos [ALL]
AB3594 H3K79me2:346021 [ALL] /
target: H3K79me2
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562751
GEO: GSM562752


6 files Download data files
modENCODE_2443

Histone H3K79me3 N2 EEMB (AB2621 H3K79ME3361576 N2 EEMB) Early Stage Embryos [ALL]
AB2621 H3K79me3:361576 [ALL] /
target: H3K79me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562753
GEO: GSM562754


6 files Download data files
modENCODE_2444

Histone H3K9me2 N2 EEMB (HK00008 H3K9ME26D11 N2 EEMB) Early Stage Embryos [ALL]
HK00008_H3K9me2:6D11 [ALL] /
target: H3K9me2
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562755
GEO: GSM562756


6 files Download data files
modENCODE_2446

HCP-3 CENP-A N2 MXEMB (OD00079 HCP3 N2 MXEMB) Mixed Stage Embryos [ALL]
OD00079_HCP3 [ALL] / hcp-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562759
GEO: GSM562760
GEO: GSM562761
GEO: GSM562762
GEO: GSM562763
...All entries in public repositories generated by this submission



24 files Download data files
modENCODE_2407


Related to: modENCODE_2540

Histone H3 N2 L3 2 (AR0144 H3144 N2 L3) L3 Larval Stage [ALL]
C. elegans AR0144_H3 rabbit serum [ALL] /
target: histone H3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562742
GEO: GSM562743


6 files Download data files
modENCODE_2408


Related to: modENCODE_2539

Histone H3 N2 L3 1 (AR0144 H3144 N2 L3 LM) L3 Larval Stage [ALL]
C. elegans AR0144_H3 rabbit serum [ALL] /
target: histone H3
N2 [ALL]
20 degree celsius [ALL]
embargo expired ArrayExpress: E-TABM-623


9 files Download data files
modENCODE_3561

SDQ3517 ZFP1 N2 MXEMB Mixed Stage Embryos [ALL]
SDQ3517_ZFP1 [ALL] / zfp-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4824   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ3517_ZFP1_N2_MXEMB_2_EE6_peaks.gff: 1797   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ3517_ZFP1_N2_MXEMB_1_EE4+2_EE6_peaks.gff: 1766   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
SDQ3517_ZFP1_N2_MXEMB_1_EE4_peaks.gff: 1261   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_2409


Related to: modENCODE_2540

Histone H3 N2 L3 (AB1791 H3 N2 L3 new) L3 Larval Stage [ALL]
C. elegans AB1791_H3 rabbit polyclonal antibody [ALL] /
target: Histone H3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562747
GEO: GSM562748


6 files Download data files
modENCODE_3559

HK00001 H3K36ME3 13C9 N2 YA s7 Germline containing young adult [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4935   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811298


4 files Download data files
modENCODE_2410

Histone H3K79me1 N2 EEMB (AB2886 H3K79ME1361912 N2 EEMB) Early Stage Embryos [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562749
GEO: GSM562750


6 files Download data files
modENCODE_3554

HK00001 H3K36ME3 13C9 N2 LTEMB s2 DevStageWorm:Late Embryos:JL:1 [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4535   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811293


4 files Download data files
modENCODE_2726

Histone H3K4me1 N2 EEMB (AB8895 H3K4ME1733246 N2 EEMB) Early Stage Embryos [ALL]
ab8895_H3K4me1:733246 [ALL] /
target: H3K4me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562777
GEO: GSM562778


6 files Download data files
modENCODE_3553

HK00001 H3K36ME3 13C9 N2 EEMB s1 Early Stage Embryos [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4452   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811292


4 files Download data files
modENCODE_2729

LEM-2 N2 MXEMB (SDQ3891 LEM2 N2 MXEMB) Mixed Embryos 20dC [ALL]
SDQ4051_LEM2 [ALL] / lem-2
SDQ3891_LEM2 [ALL] / lem-2
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562783
GEO: GSM562784
GEO: GSM562785
GEO: GSM562786


12 files Download data files
modENCODE_3557

HK00001 H3K36ME3 13C9 N2 L3 s5 L3 Larval Stage [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5722   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811296


4 files Download data files
modENCODE_3558

HK00001 H3K36ME3 13C9 N2 L4 s6 L4 Larval Stage [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 6366   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811297


4 files Download data files
modENCODE_973

Histone H3K36me3 N2 EEMB (HK00001 H3K36ME313C9 N2 EEMB) Early Stage Embryos [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562712
GEO: GSM562713
GEO: GSM562714


9 files Download data files
modENCODE_3555

HK00001 H3K36ME3 13C9 N2 L1 s3 L1 Larva Stage [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5095   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811294


4 files Download data files
modENCODE_982

Histone H3K9me3 N2 EEMB 2 (HK00009 H3K9ME32F3 N2 EEMB) Early Stage Embryos [ALL]
HK00009 H3K9me3:2F3 [ALL] /
target: H3K9me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562715
GEO: GSM562716


6 files Download data files
modENCODE_3556

HK00001 H3K36ME3 13C9 N2 L2 s4 L2 Larva Stage [ALL]
HK00001 H3K36me3:13C9 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5229   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811295


4 files Download data files
modENCODE_3550

WA30534819 H3K4ME3 N2 L3 s5 L3 Larval Stage [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4214   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM763967


4 files Download data files
modENCODE_909

Histone H3K36me2 N2 EEMB (HK00012 H3K36ME22C3 N2 EEMB) Early Stage Embryos [ALL]
HK00012_H3K36me2:2C3 [ALL] /
target: H3K36me3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562707
GEO: GSM562708


6 files Download data files
modENCODE_2541

HCP-3 CENP-A N2 EEMB (OD00079 HCP3 N2 EEMB) Early Stage Embryos [ALL]
OD00001_HCP3 [ALL] / hcp-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562769
GEO: GSM562770
GEO: GSM562771


9 files Download data files
modENCODE_3549

WA30534819 H3K4ME3 N2 L2 s4 L2 Larva Stage [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2875   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811289


4 files Download data files
modENCODE_911

MES-4 N2 EEMB (SDQ0791 MES4 N2 EEMB) Early Stage Embryos [ALL]
SDQ0791_MES4 [ALL] / mes-4
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562709
GEO: GSM562710
GEO: GSM562711


9 files Download data files
modENCODE_2604

Histone H3K36me1 N2 EEMB (AB9048 H3K36ME1206009 N2 EEMB) Early Stage Embryos [ALL]
ab9048_H3K36me1:206009 [ALL] /
target: H3K36me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562772
GEO: GSM562773


6 files Download data files
modENCODE_3552

WA30534819 H3K4ME3 N2 YA s7 Germline containing young adult [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3091   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811291


4 files Download data files
modENCODE_90

DPY-27 N2 Mixed Embryos (JL00001 DPY27 N2 MXEMB) Mixed Stage Embryos [ALL]
C. elegans DPY-27 1-409 rabbit polyclonal antibody [ALL] / dpy-27
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 1499   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM147959
GEO: GSM147968
GEO: GSM147971
GEO: GSM147974
GEO: GSM147978
...All entries in public repositories generated by this submission



16 files Download data files
modENCODE_2646

Histone H3K9me1 N2 EEMB (AB9045 H3K9ME1291918 N2 EEMB) Early Stage Embryos [ALL]
ab9045_H3K9me1:291918 [ALL] /
target: H3K9me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562775
GEO: GSM562776


6 files Download data files
modENCODE_3551

WA30534819 H3K4ME3 N2 L4 s6 L4 Larval Stage [ALL]
WA305-34819 H3K4me3 [ALL] /
target: H3K4me3
Strain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3946   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM811290


4 files Download data files
modENCODE_897

MRG-1 N2 EEMB (SDQ0790 MRG1 N2 EEMB) Early Stage Embryos [ALL]
SDQ0790_MRG1 [ALL] / mrg-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562704
GEO: GSM562705
GEO: GSM562706


9 files Download data files
modENCODE_701

SDC3 YPT47(V;X) MXEMB(JL00002 SDC3 YPT47 MXEMB) Mixed Stage Embryos [ALL]
JL00002_SDC3 [ALL] / sdc-3
Strain:N2&oldid=19052 [ALL]
WormStrain:YPT47:JL:1&oldid=21751 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562702
GEO: GSM562703


6 files Download data files
modENCODE_2738

NPP-13 N2 MXEMB (SDQ3897 NPP13 N2 MXEMB) Mixed Embryos 20dC [ALL]
SDQ4094_NPP13 [ALL] / npp-13
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562787
GEO: GSM562788
GEO: GSM562789


9 files Download data files
modENCODE_696

DPY27 YPT47(V;X) MXEMB(JL00001 DPY27 YPT47 MXEMB) Mixed Stage Embryos [ALL]
JL00001_DPY27 [ALL] / dpy-27
Strain:N2&oldid=19052 [ALL]
WormStrain:YPT47:JL:1&oldid=21751 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562699
GEO: GSM562700
GEO: GSM562701


9 files Download data files
modENCODE_2740

Histone H3K27ac N2 EEMB (AB4729 H3K27AC361571 N2 EEMB) Early Stage Embryos [ALL]
ab4729_H3K27ac:361571 [ALL] /
target: H3K27ac
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562791


3 files Download data files
modENCODE_2739

Histone H3K9me1 N2 EEMB (AB8896 H3K9ME1104560 N2 EEMB) Early Stage Embryos [ALL]
ab8896_H3K9me1:104560 [ALL] /
target: H3K9me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562790


3 files Download data files
modENCODE_695

DPY27 YPT41(II;X) MXEMB(JL00001 DPY27 YPT41 MXEMB) Mixed Stage Embryos [ALL]
JL00001_DPY27 [ALL] / dpy-27
YPT41 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562697
GEO: GSM562698


6 files Download data files
modENCODE_693

DPY27 11DH(I;X) MXEMB(JL00001 DPY27 11DH MXEMB) Mixed Stage Embryos [ALL]
JL00001_DPY27 [ALL] / dpy-27
YPT40 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562695
GEO: GSM562696


6 files Download data files
modENCODE_691

Histone H3K9me3 N2 EEMB 1 (UP07442 H3K9ME3 N2 EEMB) Early Stage Embryos [ALL]
C. elegans UP07442_H3K9ME3 rabbit polyclonal antibody [ALL] /
target: Trimethylated Lys-9 on histone H3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562692
GEO: GSM562693
GEO: GSM562694


9 files Download data files
modENCODE_663

Pol II CTD N2 EEMB (ABAB817 8WG16 N2 EEMB) Early Stage Embryos [ALL]
ABAB817_8WG16 [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562689
GEO: GSM562690
GEO: GSM562691


9 files Download data files
modENCODE_2765

Histone H3K20me1 N2 EEMB (AB9051 H4K20ME1104513 N2 EEMB) Early Stage Embryos [ALL]
ab9051_H4K20me1:104513 [ALL] /
target: H4K20me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562792
GEO: GSM562793


6 files Download data files
modENCODE_645

SDC-2 N2 MXEMB (SDQ3146 SDC2 N2 MXEMB) Mixed Stage Embryos [ALL]
SDQ3148_SDC2 [ALL] / sdc-2
SDQ3146_SDC2 [ALL] / sdc-2
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562686
GEO: GSM562687
GEO: GSM562688


9 files Download data files
modENCODE_644

DPY-28 N2 MXEMB (JL00012 DPY28 N2 MXEMB) Mixed Stage Embryos [ALL]
JL00012_DPY28 [ALL] / dpy-28
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562684
GEO: GSM562685


6 files Download data files
modENCODE_2775

Histone H3K4me1 N2 L3 (AB8895 H3K4ME1733246 N2 L3) L3 Larval Stage [ALL]
ab8895_H3K4me1:733246 [ALL] /
target: H3K4me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2784

Histone H4K20me1 N2 L3 (AB9051 H4K20ME1104513 N2 L3) L3 Larval Stage [ALL]
ab9051_H4K20me1:104513 [ALL] /
target: H4K20me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2774

Histone H4K8ac N2 L3 (AB15823 H4K8AC487128 N2 L3) L3 Larval Stage [ALL]
H4K8ac [ALL]
target: His4:CG31611
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2773

Histone H3K27ac N2 L3 (WA30634849 H3K27AC N2 L3) L3 Larval Stage [ALL]
WA306-34849_H3K27ac [ALL] /
target: H3K27ac
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2767

CBP-1 N2 MXEMB (SDQ3582 CBP1 N2 MXEMB) Mixed Embryos 20dC [ALL]
SDQ3575_CBP1 [ALL] / cbp-1
SDQ3582_CBP1 [ALL] / cbp-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562796
GEO: GSM562797
GEO: GSM562798
GEO: GSM562799


12 files Download data files
modENCODE_2766

Histone H4 Tetra ac N2 EEMB (LPAR109 H4TETRAAC109 N2 EEMB) Early Stage Embryos [ALL]
LPAR109_H4tetraac:109 [ALL] /
target: H4tetraac
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562794
GEO: GSM562795


6 files Download data files
modENCODE_2771

Histone H3K27ac N2 L3 (AB4729 H3K27AC361571 N2 L3) L3 Larval Stage [ALL]
ab4729_H3K27ac:361571 [ALL] /
target: H3K27ac
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2770

Histone H3K9me1 N2 L3 (AB9045 H3K9ME1291918 N2 L3) L3 Larval Stage [ALL]
ab9045_H3K9me1:291918 [ALL] /
target: H3K9me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_2768

Histone H4 N2 L3 (MP05858 H4DAM1636076 N2 L3) L3 Larval Stage [ALL]
H4 [ALL] /
target: H4
N2 [ALL]
20 degree celsius [ALL]
embargo expired

6 files Download data files
modENCODE_599

POL-2 N2 L4 (CVMMS126R 8WG16 N2 L4) L4 Larval Stage [ALL]
Ab:8WG16:JL:CVMMS126R [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562603
GEO: GSM562604
GEO: GSM562605
GEO: GSM562606
GEO: GSM562607


13 files Download data files
modENCODE_2970

SDQ4129 Y39G10AR18 N2 MXEMB Mixed Stage Embryos [ALL]
SDQ4129_Y39G10AR18 [ALL] / Y39G10AR.18
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 18910   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/SDQ4129_Y39G10AR18_N2_MXEMB_1_A_peaks.gff3: 5178   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/SDQ4129_Y39G10AR18_N2_MXEMB_1_A+2_A_DS_peaks.gff3: 6628   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/SDQ4129_Y39G10AR18_N2_MXEMB_2_A_DS_peaks.gff3: 7104   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_553

SDC-3 N2 MXEMB 1A (JL00002 SDC3 N2 MXEMB 1 A) Mixed Stage Embryos [ALL]
JL00002_SDC3 [ALL] / sdc-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562600


3 files Download data files
modENCODE_3624

FP00001 HPL2 N2 L3 L3 Larval Stage [ALL]
FP00001 HPL2 [ALL] / hpl-2
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 15237   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
FP00001_HPL2_N2_L3_1+2_EGS_peaks.gff: 5295   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
FP00001_HPL2_N2_L3_2_EGS_peaks.gff: 5718   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
FP00001_HPL2_N2_L3_1_peaks.gff: 4224   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_578

DPY-27 N2 MXEMB 1A (JL00001 DPY27 N2 MXEMB 1 A) Mixed Stage Embryos [ALL]
JL00001_DPY27 [ALL] / dpy-27
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562602


3 files Download data files
modENCODE_575

SDC-3 N2 MXEMB 1B (JL00002 SDC3 N2 MXEMB 1 B) Mixed Stage Embryos [ALL]
JL00002_SDC3 [ALL] / sdc-3
N2 [ALL]
20 degree celsius [ALL]
embargo expired GEO: GSM562601


3 files Download data files
modENCODE_127

SDC-3 N2 Mixed Embryos (JL00002 SDC3 N2 MXEMB) Mixed Stage Embryos [ALL]
C. elegans SDC-3 1067-1340 rabbit polyclonal antibody [ALL] / sdc-3
WormStrain:N2&oldid=19052 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 1193   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM147967
GEO: GSM147969
GEO: GSM147972
GEO: GSM147975
GEO: GSM147979
...All entries in public repositories generated by this submission



16 files Download data files
modENCODE_3180

TJ00001 H3K27ME18835 N2 EEMB Early Stage Embryos [ALL]
TJ00001 H3K27me1:8835 [ALL] /
target: H3K27me1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 6496   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/TJ00001_H3K27ME18835_N2_EEMB_1_OID27095+2_OID27095_peaks.gff3: 2781   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/TJ00001_H3K27ME18835_N2_EEMB_1_OID27095_peaks.gff3: 3279   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/TJ00001_H3K27ME18835_N2_EEMB_2_OID27095_peaks.gff3: 436   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_3181

AB15823 H4K8AC487128 N2 EEMB Early Stage Embryos [ALL]
ab15823-H4K8ac [ALL] /
target: H4K8ac
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 9933   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AB15823_H4K8AC487128_N2_EEMB_1_OID28964+2_OID29991_peaks.gff3: 3345   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AB15823_H4K8AC487128_N2_EEMB_1_OID28964_peaks.gff3: 3138   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AB15823_H4K8AC487128_N2_EEMB_2_OID29991_peaks.gff3: 3450   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_3182

MP07329 H4K16ACDAM1612187 N2 EEMB Early Stage Embryos [ALL]
MP07-329_H4K16ac:DAM1612187 [ALL] /
target: H4K16ac
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 13877   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/MP07329_H4K16ACDAM1612187_N2_EEMB_2_OID27095_peaks.gff3: 4373   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/MP07329_H4K16ACDAM1612187_N2_EEMB_1_OID25717+2_OID27095_peaks.gff3: 4877   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/MP07329_H4K16ACDAM1612187_N2_EEMB_1_OID25717_peaks.gff3: 4627   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_174

POL-2 CTD Mixed Embryos (ABAB5408 4H8 N2 MXEMB) Mixed Stage Embryos [ALL]
ab5408 [ALL] / ama-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 36179   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM562194
GEO: GSM562195
GEO: GSM562196
GEO: GSM562197
GEO: GSM562198
...All entries in public repositories generated by this submission



15 files Download data files
modENCODE_3178

AM39379 H3K36AC29108001 N2 EEMB Early Stage Embryos [ALL]
AM39379_H3K36ac_29108001 [ALL] /
target: H3K36ac
Strain:N2&oldid=39517 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 11544   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AM39379_H3K36AC29108001_N2_EEMB_1_OID27924+2_OID29991_peaks.gff3: 4244   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AM39379_H3K36AC29108001_N2_EEMB_2_OID29991_peaks.gff3: 4712   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
computed_peaks/AM39379_H3K36AC29108001_N2_EEMB_1_OID27924_peaks.gff3: 2588   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_175


Related to: modENCODE_2539

Histone H3K36me3 from N2 L3 larvae (AB9050 H3K36ME3 N2 L3) L3 Larval Stage [ALL]
C. elegans AB9050_H3K36ME3 rabbit polyclonal antibody [ALL] /
target: trimethylated Lys-36 of histone H3
N2 [ALL]
20 degree celsius [ALL]
embargo expired ArrayExpress: E-TABM-623


9 files Download data files
modENCODE_43

HTZ-1 N2 Mixed Embryos (BK00001 HTZ1 N2 MXEMB) Mixed Stage Embryos [ALL]
C. elegans HTZ-1 mouse polycolonal [ALL] / htz-1
N2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5164   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM257465
GEO: GSM257575
GEO: GSM257582
GEO: GSM257584
GEO: GSM257587
...All entries in public repositories generated by this submission



21 files Download data files
modENCODE_3205

AB9048 H3K36ME1206009 N2 L3 L3 Larval Stage [ALL]
ab9048_H3K36me1:206009 [ALL] /
target: H3K36me1
N2 [ALL]