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Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster by ChIP-seq

experiment: Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster by ChIP-seq project: Regulatory Elements in Drosophila PI: Kevin White Labs: Kevin White
The White Lab is aiming to map the association of many of the non-histone chromosomal proteins on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested chromatin-binding protein.

All features generated by this experiment:
Feature Export
BindingSite 39634
This represents 39626 unique BindingSites
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
There are 6 ChIP-seq submissions for this experiment:
DCC id Name developmental stage antibody cell line strain Embargoed until Features, GBrowse and Data Files
modENCODE_4105

Su(Hw) WPP-seq White prepupae (WPP) [ALL]
Su(Hw)-PG [ALL]
target: suppressor of Hairy wing
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 5357   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_5028

Trl 8-16h embryonic ChIP-seq Embryo 8-16 h [ALL]
KW3-Trl-D2 [ALL]
target: Trithorax-like
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 11713   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


11 files Download data files
modENCODE_4104

Su(Hw) 16-24-seq Embryo 16-24 h [ALL]
Su(Hw)-PG [ALL]
target: suppressor of Hairy wing
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 4993   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_4100

Sin3A Kc-seq Sin3A-RC [ALL]
target: Sin3A
Kc167 [ALL]
embargo expired
BindingSite: 1371   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_4094

mod(mdg4) W3L-seq L3 stage larvae [ALL]
KW4-mod(mdg4)-D2 [ALL]
target: modifier of mdg4
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 445   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_4091

HP1 8-16-seq Embryo 8-16 h [ALL]
HP1 antibody (ab24726) [ALL]
target: Heterochromatin Protein 1b
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 15755   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files