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Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster

experiment: Chromatin Binding Site Mapping of non-Histone Chromosomal Proteins in D. melanogaster project: Regulatory Elements in Drosophila PI: Kevin White Labs: Kevin White
The White Lab is aiming to map the association of many of the non-histone chromosomal proteins on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation-on-chip (ChIP-on-chip) utilizing whole-genome tiling arrays. The data generated by ChIP-chip experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested chromatin-binding protein.

All features generated by this experiment:
Feature Export
ProteinBindingSite 94040
This represents 89685 unique ProteinBindingSites
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
All entries in public repositories generated by this experiment
There are 13 ChIP-chip submissions for this experiment:
DCC id Name developmental stage antibody strain Embargoed until Features, GBrowse and Data Files
modENCODE_903

E8-12 CBP Set2 Embryo 8-12 h [ALL]
CBP_antibody [ALL] /
target: nejire
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 329   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637635
GEO: GSM637636
GEO: GSM637637
GEO: GSM637638
GEO: GSM637639
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_2566

E0-12h HDAC6-497 Embryo 0-12 h [ALL]
HDAC6-497 [ALL]
target: HDAC6
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 5385   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637722
GEO: GSM637723
GEO: GSM637724
GEO: GSM637725
GEO: GSM637726
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2558

E0-12h HDAC11-494 Embryo 0-12 h [ALL]
HDAC11-494 [ALL]
target: Histone deacetylase X
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 7215   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637674
GEO: GSM637675
GEO: GSM637676
GEO: GSM637677
GEO: GSM637678
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2565

E0-12h HDAC6-496 Embryo 0-12 h [ALL]
HDAC6-496 [ALL]
target: HDAC6
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 5709   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637716
GEO: GSM637717
GEO: GSM637718
GEO: GSM637719
GEO: GSM637720
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2560

E0-12h HDAC1-501 Embryo 0-12 h [ALL]
HDAC1-501 [ALL]
target: Rpd3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 9377   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637686
GEO: GSM637687
GEO: GSM637688
GEO: GSM637689
GEO: GSM637690
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2567

E0-12h HDAC11-495 Embryo 0-12 h [ALL]
HDAC11-495 [ALL]
target: Histone deacetylase X
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 2091   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637728
GEO: GSM637729
GEO: GSM637730
GEO: GSM637731
GEO: GSM637732
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2559

E0-12h HDAC1-500 Embryo 0-12 h [ALL]
HDAC1-500 [ALL]
target: Rpd3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 9940   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637680
GEO: GSM637681
GEO: GSM637682
GEO: GSM637683
GEO: GSM637684
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2562

E0-12h HDAC3-499 Embryo 0-12 h [ALL]
HDAC3-499 [ALL]
target: Histone deacetylase 3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 12119   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637698
GEO: GSM637699
GEO: GSM637700
GEO: GSM637701
GEO: GSM637702
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2561

E0-12h HDAC3-498 Embryo 0-12 h [ALL]
HDAC3-498 [ALL]
target: Histone deacetylase 3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 12111   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637692
GEO: GSM637693
GEO: GSM637694
GEO: GSM637695
GEO: GSM637696
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2564

E0-12h HDAC4a-493 Embryo 0-12 h [ALL]
HDAC4a-493 [ALL]
target: HDAC4
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 7309   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637710
GEO: GSM637711
GEO: GSM637712
GEO: GSM637713
GEO: GSM637714
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_2563

E0-12h HDAC4a-492 Embryo 0-12 h [ALL]
HDAC4a-492 [ALL]
target: HDAC4
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 8965   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637704
GEO: GSM637705
GEO: GSM637706
GEO: GSM637707
GEO: GSM637708
...All entries in public repositories generated by this submission



8 files Download data files
modENCODE_905

E12-16 CBP ChIP-chip Embryo 12-16 h [ALL]
CBP_antibody [ALL] /
target: nejire
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 7704   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637644
GEO: GSM637645
GEO: GSM637646


5 files Download data files
modENCODE_906

E12-16 Pol II ChIP-chip Embryo 12-16 h [ALL]
PolII [ALL] /
target: RNA Polymerase II
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 5786   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637647
GEO: GSM637648
GEO: GSM637649
GEO: GSM637650
GEO: GSM637651
...All entries in public repositories generated by this submission



11 files Download data files