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Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster by ChIP-seq

experiment: Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster by ChIP-seq project: Regulatory Elements in Drosophila PI: Kevin White Labs: Kevin White
The White Lab is aiming to map the association of the main post-translationally modified histones on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq) utilizing an Illumina next generation sequencing platform. The data generated by ChIP-seq experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested histone modification.

All features generated by this experiment:
Feature Export
BindingSite 52239
This represents 52226 unique BindingSites
TAB CSV GFF3 (for UCSC) SEQ
ProteinBindingSite 5752 TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
All entries in public repositories generated by this experiment
There are 6 ChIP-seq submissions for this experiment:
DCC id Name developmental stage antibody cell line strain Embargoed until Features, GBrowse and Data Files
modENCODE_4985

H3K4me1 S2 cells ChIP-seq H3K4me1 [ALL] /
target: H3K4me1
S2-DRSC [ALL]
embargo expired
BindingSite: 11173   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_4988

H3K4me3 S2 cells ChIP-seq H3K4me3 [ALL] /
target: H3K4me3
S2-DRSC [ALL]
embargo expired
BindingSite: 11572   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_3244

H3K4me3 Kc cells ChIP-seq H3K4me3 [ALL] /
target: H3K4me3
Kc167 [ALL]
embargo expired
ProteinBindingSite: 5752   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM570051
GEO: GSM570052
GEO: GSM570053


2 files Download data files
modENCODE_4987

H3K4me3 8-16h embryonic ChIP-seq Embryo 8-16 h [ALL]
H3K4me3 [ALL] /
target: H3K4me3
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 7425   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


9 files Download data files
modENCODE_4117

H3K4me3 WPP-seq White prepupae (WPP) [ALL]
H3K4me3 [ALL] /
target: H3K4me3
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 7743   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files
modENCODE_4986

H3K4me1 W3L ChIP-seq L3 stage larvae [ALL]
H3K4me1 [ALL] /
target: H3K4me1
yellow cinnabar brown speck [ALL]
embargo expired
BindingSite: 14326   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


7 files Download data files