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Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster

experiment: Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster project: Regulatory Elements in Drosophila PI: Kevin White Labs: Kevin White
The White Lab is aiming to map the association of the main post-translationally modified histones on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation-on-chip (ChIP-on-chip) utilizing whole-genome tiling arrays. The data generated by ChIP-chip experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested histone modification.

All features generated by this experiment:
Feature Export
ProteinBindingSite 15926
This represents 15351 unique ProteinBindingSites
TAB CSV GFF3 (for UCSC) SEQ
NO GBROWSE TRACKS FOR THIS EXPERIMENT
All entries in public repositories generated by this experiment
There are 6 ChIP-chip submissions for this experiment:
DCC id Name developmental stage antibody strain Embargoed until Features, GBrowse and Data Files
modENCODE_970

E0-4 H3K27Ac - Set 2 Embryo 0-4 h [ALL]
H3K27Ac [ALL] /
target: H3K27Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 5431   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637656
GEO: GSM637657
GEO: GSM637658
GEO: GSM637659
GEO: GSM637660
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_971

E0-4 H3K9Me3 - Set 2 Embryo 0-4 h [ALL]
H3K9me3 [ALL]
target: His3:CG33806
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 2994   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637665
GEO: GSM637666
GEO: GSM637667
GEO: GSM637668
GEO: GSM637669
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_581

AdFem H3K9ac Adult Female [ALL]
H3K9Ac [ALL] /
target: H3K9Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 4905   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637626
GEO: GSM637627
GEO: GSM637628
GEO: GSM637629
GEO: GSM637630
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_411

E16-20 H3K9Ac ChIP-chip Embryo 16-20 h [ALL]
H3K9Ac [ALL] /
target: H3K9Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 2371   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637608
GEO: GSM637609
GEO: GSM637610
GEO: GSM637611
GEO: GSM637612
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_372

AdultMale-H3K27me3 Adult Male [ALL]
H3K27me3 [ALL] /
target: H3K27me3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 185   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637599
GEO: GSM637600
GEO: GSM637601
GEO: GSM637602
GEO: GSM637603
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_429

AdFem H3K9me3 Adult Female [ALL]
H3K9me3 [ALL]
target: His3:CG33806
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 40   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GEO: GSM637617
GEO: GSM637618
GEO: GSM637619
GEO: GSM637620
GEO: GSM637621
...All entries in public repositories generated by this submission



11 files Download data files