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Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster

experiment: Chromatin Binding Site Mapping of Modified Histone Proteins in D. melanogaster project: Regulatory Elements in Drosophila PI: Kevin White Labs: Kevin White
The White Lab is aiming to map the association of the main post-translationally modified histones on the genome of Drosophila melanogaster. One technique that we use for this purpose is chromatin immunoprecipitation-on-chip (ChIP-on-chip) utilizing whole-genome tiling arrays. The data generated by ChIP-chip experiments consist basically of a plot of signal intensity across the genome. The highest signals correspond to positions in the genome occupied by the tested histone modification.

All features generated by this experiment:
Feature Export
ProteinBindingSite 15926
This represents 15351 unique ProteinBindingSites
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All entries in public repositories generated by this experiment
There are 6 ChIP-chip submissions for this experiment:
DCC id Name developmental stage antibody strain Embargoed until Features, GBrowse and Data Files
modENCODE_970

E0-4 H3K27Ac - Set 2 Embryo 0-4 h [ALL]
H3K27Ac [ALL] /
target: H3K27Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 5431   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: E0_4_H3K27Ac_set2
GEO: GSM637656
GEO: GSM637657
GEO: GSM637658
GEO: GSM637659
GEO: GSM637660
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_971

E0-4 H3K9Me3 - Set 2 Embryo 0-4 h [ALL]
H3K9me3 [ALL]
target: His3:CG33806
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 2994   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: E0_4_H3K9Me3_set2
GEO: GSM637665
GEO: GSM637666
GEO: GSM637667
GEO: GSM637668
GEO: GSM637669
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_581

AdFem H3K9ac Adult Female [ALL]
H3K9Ac [ALL] /
target: H3K9Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 4905   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: AdultFemale_H3K9Ac
GEO: GSM637626
GEO: GSM637627
GEO: GSM637628
GEO: GSM637629
GEO: GSM637630
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_411

E16-20 H3K9Ac ChIP-chip Embryo 16-20 h [ALL]
H3K9Ac [ALL] /
target: H3K9Ac
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 2371   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: E16_20_H3K9Ac
GEO: GSM637608
GEO: GSM637609
GEO: GSM637610
GEO: GSM637611
GEO: GSM637612
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_372

AdultMale-H3K27me3 Adult Male [ALL]
H3K27me3 [ALL] /
target: H3K27me3
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 185   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: AdultMale_H3K27Me3
GEO: GSM637599
GEO: GSM637600
GEO: GSM637601
GEO: GSM637602
GEO: GSM637603
...All entries in public repositories generated by this submission



11 files Download data files
modENCODE_429

AdFem H3K9me3 Adult Female [ALL]
H3K9me3 [ALL]
target: His3:CG33806
yellow cinnabar brown speck [ALL]
embargo expired
ProteinBindingSite: 40   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: AdultFemale_H3K9Me3
GEO: GSM637617
GEO: GSM637618
GEO: GSM637619
GEO: GSM637620
GEO: GSM637621
...All entries in public repositories generated by this submission



11 files Download data files