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Changes in expression of small RNAs under stress conditions in C. elegans

experiment: Changes in expression of small RNAs under stress conditions in C. elegans project: The C. elegans Transcriptome PI: Robert Waterston Labs: Frank Slack
We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression under various stress conditions in C. elegans. RNAs were prepared C. elegans hermaphrodites, under starvation, bacterial exposure, and heat shock stresses, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All 12 tracks I II III IV V X
All entries in public repositories generated by this experiment
There are 12 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain temperature Embargoed until Features, GBrowse and Data Files
modENCODE_6509


Related to: modENCODE_5387

Ce stress PA14 smallRNA RNA-seq young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6509.sorted
GEO: GSM632212
SRA: SRR077256


2 files Download data files
modENCODE_4777


Related to: modENCODE_5394

Baseline spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4777.sorted
GEO: GSM870220
SRA: SRR404123


2 files Download data files
modENCODE_6510


Related to: modENCODE_5388

Ce stress L1 arrest N2 smallRNA RNA-seq L1 arrest larva 24hr post-L1 stage larvae [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6510.sorted
GEO: GSM632213
SRA: SRR077257


2 files Download data files
modENCODE_4775


Related to: modENCODE_5392

Adult starvation spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4775.sorted
GEO: GSM870225
SRA: SRR404128


2 files Download data files
modENCODE_4776


Related to: modENCODE_5393

Heat shock recovery spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4776.sorted
GEO: GSM870227
SRA: SRR404130


2 files Download data files
modENCODE_4774


Related to: modENCODE_5391

Oxidation spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4774.sorted
GEO: GSM870223
SRA: SRR404126


2 files Download data files
modENCODE_4772


Related to: modENCODE_5389

Heat shock spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4772.sorted
GEO: GSM870222
SRA: SRR404125


2 files Download data files
modENCODE_6507


Related to: modENCODE_5385

Ce stress Untreated control N2 smallRNA RNA-seq young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6507.sorted
GEO: GSM632210
SRA: SRR077254


2 files Download data files
modENCODE_4778


Related to: modENCODE_5395

Untreated control 6hrs spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4778.sorted
GEO: GSM870221
SRA: SRR404124


2 files Download data files
modENCODE_6508


Related to: modENCODE_5386

Ce stress Heatshock N2 smallRNA RNA-seq young adult (23dC DAY1 post-L4 molt) [ALL]
N2 [ALL]
20 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_6508.sorted
GEO: GSM632211
SRA: SRR077255


2 files Download data files
modENCODE_4779


Related to: modENCODE_5396

Untreated control 12hrs spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4779.sorted
GEO: GSM870226
SRA: SRR404129


2 files Download data files
modENCODE_4773


Related to: modENCODE_5390

Hypoxia spe-9 sncRNAs young adult (23dC DAY1 post-L4 molt) [ALL]
BA671 [ALL]
23 degree celsius [ALL]
embargo expired
GBrowse tracks: submission_4773.sorted
GEO: GSM870224
SRA: SRR404127


2 files Download data files