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Changes in expression of small RNAs during development in C. elegans

experiment: Changes in expression of small RNAs during development in C. elegans project: The C. elegans Transcriptome PI: Robert Waterston Labs: Frank Slack
We report a significant number of miRNAs and other non-coding small RNAs show dramatic changes in expression during development in C. elegans. RNAs were prepared from different time points during development of C. elegans hermaphrodites and males, and used for making cDNA libraries for small RNAs. Each library was sequenced using recent advances in high-throughput sequencing technology, Solexa. This study should lead to a better understanding of the aging process and age-related diseases.

NO FEATURES GENERATED BY THIS EXPERIMENT All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All 14 tracks I II III IV V X
All entries in public repositories generated by this experiment
There are 7 RNA-seq submissions for this experiment:
DCC id Name developmental stage strain Embargoed until Features, GBrowse and Data Files
modENCODE_6502


Related to: modENCODE_5380

Ce male-yAd smallRNA RNA-seq young Adult Males 23dC [ALL]
CB4689 [ALL]
embargo expired
GBrowse tracks: yMale_dpyhim_s_6.S-3.WS220.soap.sam_sorted
yMale_dpyhim_s_6.S-3.WS220.soap.sam_sorted
GEO: GSM336086
SRA: SRR014972


2 files Download data files
modENCODE_6498


Related to: modENCODE_5376

Ce mid-L2 smallRNA RNA-seq mid-L2 20dC 14hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: L2_s_6.S-3.WS220.soap.sam1_header.sam_sorted
L2_s_6.S-3.WS220.soap.sam1_header.sam_sorted
GEO: GSM336056
SRA: SRR014968


2 files Download data files
modENCODE_6497


Related to: modENCODE_5375

Ce mid-L1 smallRNA RNA-seq mid-L1 20dC 4hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: L1_s_5.S-3.WS220.soap.sam_sorted
L1_s_5.S-3.WS220.soap.sam_sorted
GEO: GSM336055
SRA: SRR014967


2 files Download data files
modENCODE_6499


Related to: modENCODE_5377

Ce mid-L3 smallRNA RNA-seq mid-L3 20dC 25hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: L3_s_7.S-3.WS220.soap.sam1_header.sam_sorted
L3_s_7.S-3.WS220.soap.sam1_header.sam_sorted
GEO: GSM336058
SRA: SRR014969


2 files Download data files
modENCODE_6496


Related to: modENCODE_5374

Ce Embryo smallRNA RNA-seq Embryo [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: Egg_s_3.S-3.WS220.soap.sam_sorted
Egg_s_3.S-3.WS220.soap.sam_sorted
GEO: GSM336052
SRA: SRR014966


2 files Download data files
modENCODE_6500


Related to: modENCODE_5378

Ce mid-L4 smallRNA RNA-seq mid-L4 20dC 36hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: L4_s_8.S-3.WS220.soap.sam1_header.sam
L4_s_8.S-3.WS220.soap.sam1_header.sam
GEO: GSM336059
SRA: SRR014970


2 files Download data files
modENCODE_6501


Related to: modENCODE_5379

Ce young-adult smallRNA RNA-seq young Adult 20dC 48hrs post-L1 stage larvae [ALL]
N2 [ALL]
embargo expired
GBrowse tracks: YA_Adult_s_1.S-3.WS220.soap.sam1_header.sam
YA_Adult_s_1.S-3.WS220.soap.sam1_header.sam
GEO: GSM336060
SRA: SRR014971


2 files Download data files