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ChIP-Seq Identification of C. elegans TF Binding Sites

experiment: ChIP-Seq Identification of C. elegans TF Binding Sites project: Regulatory Elements in C. elegans PI: Michael Snyder Labs: Gerstein, Michael Snyder
We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals. Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.

All features generated by this experiment:
Feature Export
BindingSite ? 3513520
This represents 3476762 unique BindingSites
TAB CSV GFF3 (for UCSC) SEQ
TFBindingSite 72600
This represents 72590 unique TFBindingSites
TAB CSV GFF3 (for UCSC) SEQ
All GBrowse tracks generated for this experiment:
GBrowse tracks: by chromosome
All 302 tracks I II III IV V X
All entries in public repositories generated by this experiment
There are 242 ChIP-seq submissions for this experiment:
DCC id Name developmental stage strain target gene temperature Embargoed until Features, GBrowse and Data Files
modENCODE_3079

Snyder NHR11 GFP L2 L2 stage larvae [ALL]
OP305 [ALL] / nhr-11
nhr-11 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4278   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR11_GFP_L2_rep1.GFF3: 1244   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR11_GFP_L2_combined_peaks.GFF3: 2453   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR11_GFP_L2_rep2.GFF3: 581   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: NHR11_GFP_L2


10 files Download data files
modENCODE_3078

Snyder LIN15B GFP L4 L4 stage larvae [ALL]
OP184 [ALL] / lin-15B
lin-15B [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2002   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN15B_GFP_L4_combined_peaks.GFF3: 1149   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN15B_GFP_L4_rep2.GFF3: 539   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN15B_GFP_L4_rep1.GFF3: 314   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: LIN15B_GFP_L4


10 files Download data files
modENCODE_3077

Snyder R02D3.7 GFP L4 L4 stage larvae [ALL]
OP218 [ALL] / R02D3.7
R02D3.7 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4651   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_R02D3.7_GFP_L4_combined_peaks.GFF3: 2590   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_R02D3.7_GFP_L4_rep2.GFF3: 810   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_R02D3.7_GFP_L4_rep1.GFF3: 1251   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: R02D3.7_L4
GEO: GSM1183589
GEO: GSM1183590
GEO: GSM1183591
GEO: GSM1183592


10 files Download data files
modENCODE_3074

Snyder Pefl1 EFL1 GFP L1 fed L1 stage larvae [ALL]
YL424 [ALL] / efl-1
efl-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 10709   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pefl1_EFL1_GFP_L1_combined_peaks.GFF3: 4581   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pefl1_EFL1_GFP_L1_rep1.GFF3: 1588   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pefl1_EFL1_GFP_L1_rep2.GFF3: 4540   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Pefl1_EFL1_GFP_L1


10 files Download data files
modENCODE_3076

Snyder CES1 GFP L1 fed L1 stage larvae [ALL]
OP174 [ALL] / ces-1
ces-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5403   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L1_combined_peaks.GFF3: 2986   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L1_rep2.GFF3: 410   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L1_rep1.GFF3: 2007   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CES1_GFP_L1


10 files Download data files
modENCODE_3075

Snyder Pdpl1 DPL1 GFP L1 fed L1 stage larvae [ALL]
YL425 [ALL] / dpl-1
dpl-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 12878   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pdpl1_DPL1_GFP_L1_rep2.GFF3: 3394   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pdpl1_DPL1_GFP_L1_combined_peaks.GFF3: 5344   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Pdpl1_DPL1_GFP_L1_rep1.GFF3: 4140   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Pdpl1_DPL1_GFP_L1


10 files Download data files
modENCODE_3073

Snyder PIE DPL-1 GFP YA Young Adult [ALL]
YL390 [ALL] / dpl-1
dpl-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 10464   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Ppie1_DPL1_GFP_YA_combined_peaks.GFF3: 5528   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Ppie1_DPL1_GFP_YA_rep1.GFF3: 1690   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_Ppie1_DPL1_GFP_YA_rep2.GFF3: 3246   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PIE1_DPL1_GFP_YA


10 files Download data files
modENCODE_3156

Snyder ALR-1 L2 GFP L2 stage larvae [ALL]
OP200 [ALL] / alr-1
alr-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 11781   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALR-1_GFP_L2_rep2.GFF3: 3994   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALR-1_GFP_L2_rep1.GFF3: 1628   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALR-1_GFP_L2_combined_peaks.GFF3: 6159   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_ALR1_COMB
Snyder_ANTIGFP_WIG_ALR1_COMB
Snyder_ANTIGFP_ALR1_RECALL
GEO: GSM700163
GEO: GSM700164
GEO: GSM700165
GEO: GSM700166
GEO: GSM700167


10 files Download data files
modENCODE_3149

Snyder GEI-11 GFP L2 L2 stage larvae [ALL]
OP179 [ALL] / gei-11
gei-11 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 8837   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L2_rep2.GFF3: 3845   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L2_combined_peaks.GFF3: 4411   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L2_rep1.GFF3: 581   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: GEI11_L2_GFP


10 files Download data files
modENCODE_3152

Snyder HAM-1 GFP L1 fed L1 stage larvae [ALL]
OP102 [ALL] / ham-1
ham-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 12709   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_HAM-1_GFP_L1_rep2.GFF3: 2247   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_HAM-1_GFP_L1_rep1.GFF3: 4749   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_HAM-1_GFP_L1_combined.GFF3: 5713   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: HAM-1_L1
GEO: GSM1183593
GEO: GSM1183594
GEO: GSM1183595
GEO: GSM1183596


10 files Download data files
modENCODE_3155

Snyder EOR-1 L3 GFP L3 stage larvae [ALL]
OP81 [ALL] / eor-1
eor-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 14944   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_rep1.GFF3: 3942   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_combined_peaks.GFF3: 6869   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_rep2.GFF3: 4133   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: EOR1_L3_GFP


10 files Download data files
modENCODE_3148

Snyder F16B12.6 GFP L1 fed L1 stage larvae [ALL]
OP114 [ALL] / F16B12.6
F16B12.6 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3732   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F16B12.6_GFP_L1_rep2.GFF3: 963   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F16B12.6_GFP_L1_rep1.GFF3: 1164   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F16B12.6_GFP_L1_combined_peaks.GFF3: 1605   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_CHIPCHIP_F16B12
SNYDER_ANTIGFP_CHIPCHIP_F16B12


10 files Download data files
modENCODE_3082

Snyder SEA2 GFP L3 L3 stage larvae [ALL]
OP193 [ALL] / sea-2
sea-2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2257   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SEA2_GFP_L3_rep1.GFF3: 561   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SEA2_GFP_L3_combined_peaks.GFF3: 1456   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SEA2_GFP_L3_rep2.GFF3: 240   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_CHIPCHIP_SEA2
SNYDER_ANTIGFP_CHIPCHIP_SEA2


10 files Download data files
modENCODE_3081

Snyder CES1 GFP L3 L3 stage larvae [ALL]
OP174 [ALL] / ces-1
ces-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4500   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L3_rep1.GFF3: 592   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L3_combined_peaks.GFF3: 2713   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES1_GFP_L3_rep2.GFF3: 1195   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CES1_GFP_L3


10 files Download data files
modENCODE_3147

Snyder DAF12 GFP L3 L3 stage larvae [ALL]
OP167 [ALL] / daf-12
daf-12 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 151   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF12_GFP_L3_combined_peaks.GFF3: 110   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF12_GFP_L3_rep1.GFF3: 19   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF12_GFP_L3_rep2.GFF3: 22   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: DAF12_GFP_L3_OP167


10 files Download data files
modENCODE_3211

Snyder EFL-1 GFP L1 fed L1 stage larvae [ALL]
YL418 [ALL] / efl-1
efl-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 62332   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EFL-1_GFP_L1_rep3.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EFL-1_GFP_L1_rep2.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EFL-1_GFP_L1_combined.GFF3: 2332   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: EFL-1_L1


9 files Download data files
modENCODE_3209

Snyder CEH-16 GFP L2 L2 stage larvae [ALL]
OP82 [ALL] / ceh-16
ceh-16 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3650   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CEH-16_GFP_L2_combined.GFF3: 1848   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CEH-16_GFP_L2_rep1.GFF3: 1017   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CEH-16_GFP_L2_rep2.GFF3: 785   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_CEH-16_L2_COMB
Snyder_ANTIGFP_WIG_CEH-16_L2_COMB


10 files Download data files
modENCODE_3162

Snyder EGL-5 L3 POL-2 L3 stage larvae [ALL]
OP54 [ALL] / egl-5
ama-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4043   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_POL-2_L3_combined_peaks.GFF3: 1758   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_POL-2_L3_rep2.GFF3: 1220   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_POL-2_L3_rep1.GFF3: 1065   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIAMA_WIG_COMB_EGL5_POLII_L3
Snyder_ANTIAMA_WIG_COMB_EGL5_POLII_L3
GEO: GSM1005480
GEO: GSM1005481
GEO: GSM1005482
GEO: GSM1005483


10 files Download data files
modENCODE_3208

Snyder C34F6.9 GFP L2 L2 stage larvae [ALL]
OP324 [ALL] / C34F6.9
C34F6.9 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 59593   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C34F6.9_GFP_L2_combined.GFF3: 6494   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C34F6.9_GFP_L2_rep1.GFF3: 29725   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C34F6.9_GFP_L2_rep2.GFF3: 23374   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_C34F6.9
Snyder_ANTIGFP_WIG_C34F6.9
GEO: GSM1183597
GEO: GSM1183598
GEO: GSM1183599
GEO: GSM1183600


10 files Download data files
modENCODE_3161


Related to: modENCODE_3354

Snyder PHA-4 YA GFP Young Adult [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4688   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_YA_combined_peaks.GFF3: 2436   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_YA_rep1.GFF3: 418   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_YA_rep2.GFF3: 1834   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA4_GFP_YA
PHA4_GFP_YA
GEO: GSM700191
GEO: GSM700192
GEO: GSM700193
GEO: GSM700194
GEO: GSM700195
...All entries in public repositories generated by this submission



10 files Download data files
modENCODE_3354


Related to: modENCODE_3161

ChIP-seq PHA4 YA peaks embargo expired
TFBindingSite: 551   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


5 files Download data files
modENCODE_3160

Snyder EOR-1 L3 POL-2 L3 stage larvae [ALL]
OP81 [ALL] / eor-1
ama-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 23525   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_POL-2_L3_combined_peaks.GFF3: 9051   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_POL-2_L3_rep2.GFF3: 7115   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_POL-2_L3_rep1.GFF3: 7359   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIAMA_WIG_COMB_EOR1_POLII_L3
Snyder_ANTIAMA_WIG_COMB_EOR1_POLII_L3
GEO: GSM1005476
GEO: GSM1005477
GEO: GSM1005478
GEO: GSM1005479


10 files Download data files
modENCODE_3336


Related to: modENCODE_3159

ChIP-seq EGL5 L3 peaks embargo expired
TFBindingSite: 1717   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_EGL5_RECALL


5 files Download data files
modENCODE_3159


Related to: modENCODE_3336

Snyder EGL-5 L3 GFP L3 stage larvae [ALL]
OP54 [ALL] / egl-5
egl-5 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 8453   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_GFP_L3_rep2.GFF3: 1345   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_GFP_L3_combined_peaks.GFF3: 4688   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EGL-5_GFP_L3_rep1.GFF3: 2420   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_COMB_EGL5_L3_GFP
Snyder_ANTIGFP_WIG_COMB_EGL5_L3_GFP
SNYDER_ANTIGFP_EGL5_RECALL
GEO: GSM700182
GEO: GSM700183
GEO: GSM700184
GEO: GSM700185
GEO: GSM700186
...All entries in public repositories generated by this submission



10 files Download data files
modENCODE_3351


Related to: modENCODE_3158

ChIP-seq PHA4 L2 peaks embargo expired
TFBindingSite: 4151   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


5 files Download data files
modENCODE_3158


Related to: modENCODE_3351

Snyder PHA-4 L2 GFP L2 stage larvae [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 17157   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_L2_combined_peaks.GFF3: 7745   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_L2_rep1.GFF3: 4077   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_L2_rep2.GFF3: 5335   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA4_L2_GFP
PHA4_L2_GFP
GEO: GSM700177
GEO: GSM700178
GEO: GSM700179
GEO: GSM700180
GEO: GSM700181


10 files Download data files
modENCODE_3348


Related to: modENCODE_3157

ChIP-seq PES1 L4 peaks embargo expired
TFBindingSite: 3260   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_PES1_RECALL


5 files Download data files
modENCODE_3157


Related to: modENCODE_3348

Snyder PES-1 L4 GFP L4 stage larvae [ALL]
OP87 [ALL] / pes-1
pes-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 14886   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PES-1_GFP_L4_rep2.GFF3: 4185   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PES-1_GFP_L4_rep1.GFF3: 3488   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PES-1_GFP_L4_combined_peaks.GFF3: 7213   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_COMB_PES1_L4_GFP
Snyder_ANTIGFP_WIG_COMB_PES1_L4_GFP
Snyder_ANTIGFP_PES1_RECALL
GEO: GSM700168
GEO: GSM700169
GEO: GSM700170
GEO: GSM700171
GEO: GSM700172
...All entries in public repositories generated by this submission



10 files Download data files
modENCODE_3219

Snyder ZTF-7 GFP L4 L4 stage larvae [ALL]
OP332 [ALL] / ztf-7
ztf-7 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 63305   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-7_GFP_L4_rep2.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-7_GFP_L4_combined.GFF3: 3305   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-7_GFP_L4_rep1.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_Snyder_ZTF-7_GFP_L4_COMB
Snyder_ANTIGFP_WIG_Snyder_ZTF-7_GFP_L4_COMB
GEO: GSM729312
GEO: GSM729313
GEO: GSM729314
GEO: GSM729315


10 files Download data files
modENCODE_3218

Snyder ZTF-4 GFP L3 L3 stage larvae [ALL]
OP322 [ALL] / ztf-4
ztf-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 57784   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-4_GFP_L3_rep2.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-4_GFP_L3_combined.GFF3: 1082   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZTF-4_GFP_L3_rep1.GFF3: 26702   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ZTF-4_L3
GEO: GSM729308
GEO: GSM729309
GEO: GSM729310
GEO: GSM729311


10 files Download data files
modENCODE_3217

Snyder W03F9.2 GFP YA L4-Young Adult [ALL]
OP215 [ALL] / W03F9.2
W03F9.2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 29583   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_W03F9.2_GFP_YA_rep2.GFF3: 10092   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_W03F9.2_GFP_YA_combined.GFF3: 13023   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_W03F9.2_GFP_YA_rep1.GFF3: 6468   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_CHIPCHIP_W03F9
SNYDER_ANTIGFP_CHIPCHIP_W03F9
GEO: GSM729304
GEO: GSM729305
GEO: GSM729306
GEO: GSM729307


10 files Download data files
modENCODE_3216

Snyder TLP-1 GFP L1 fed L1 stage larvae [ALL]
OP321 [ALL] / tlp-1
tlp-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 39427   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_TLP-1_GFP_L1_rep2.GFF3: 14793   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_TLP-1_GFP_L1_combined.GFF3: 283   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_TLP-1_GFP_L1_rep1.GFF3: 24351   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_TLP-1_L1_COMB
GEO: GSM729300
GEO: GSM729301
GEO: GSM729302
GEO: GSM729303


10 files Download data files
modENCODE_3215

Snyder PHA-4 GFP L3 L3 stage larvae [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 13772   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_L3_rep2.GFF3: 2569   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PHA-4_GFP_L3_combined.GFF3: 11203   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA-4_L3
GEO: GSM729296
GEO: GSM729297
GEO: GSM729298
GEO: GSM729299


10 files Download data files
modENCODE_3214

Snyder NHR-12 GFP L2 L2 stage larvae [ALL]
OP318 [ALL] / nhr-12
nhr-12 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 55242   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-12_GFP_L2_combined.GFF3: 197   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-12_GFP_L2_rep1.GFF3: 25045   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-12_GFP_L2_rep2.GFF3: 30000   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: NHR-12_L2
GEO: GSM1183613
GEO: GSM1183614
GEO: GSM1183615
GEO: GSM1183616


10 files Download data files
modENCODE_3213

Snyder LIN-35 GFP L1 fed L1 stage larvae [ALL]
YL409 [ALL] / lin-35
lin-35 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 60104   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN-35_GFP_L1_rep1.GFF3: 26583   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN-35_GFP_L1_combined.GFF3: 4794   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_LIN-35_GFP_L1_rep2.GFF3: 28727   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: LIN-35_L1


10 files Download data files
modENCODE_3224

Snyder FOS-1 GFP L2 L2 stage larvae [ALL]
OP304 [ALL] / fos-1
fos-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 20173   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_FOS-1_GFP_L2_rep1.GFF3: 7306   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_FOS-1_GFP_L2_rep2.GFF3: 4216   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_FOS-1_GFP_L2_combined.GFF3: 8651   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: FOS1_GFP_L2
GEO: GSM729332
GEO: GSM729333
GEO: GSM729334
GEO: GSM729335


10 files Download data files
modENCODE_3227

Snyder PEB-1 GFP L2 L2 stage larvae [ALL]
OP86 [ALL] / peb-1
peb-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3102   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PEB-1_GFP_L2_combined.GFF3: 1854   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PEB-1_GFP_L2_rep1.GFF3: 1095   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_PEB-1_GFP_L2_rep2.GFF3: 153   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_PEB-1_L2_COMB
GEO: GSM1183617
GEO: GSM1183618
GEO: GSM1183619
GEO: GSM1183620


10 files Download data files
modENCODE_3228

Snyder SMA-9 GFP L2 L2 stage larvae [ALL]
OP130 [ALL] / sma-9
sma-9 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 1566   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SMA-9_GFP_L2_rep2.GFF3: 89   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SMA-9_GFP_L2_rep1.GFF3: 517   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SMA-9_GFP_L2_combined.GFF3: 960   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_SMA-9_L2_COMB
Snyder_ANTIGFP_WIG_SMA-9_L2_COMB
GEO: GSM1183621
GEO: GSM1183622
GEO: GSM1183623
GEO: GSM1183624


10 files Download data files
modENCODE_3220

Snyder ZAG-1 GFP L2 L2 stage larvae [ALL]
OP83 [ALL] / zag-1
zag-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 8109   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L2_rep1.GFF3: 2556   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L2_combined.GFF3: 4109   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L2_rep2.GFF3: 1444   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ZAG1_GFP_L2
GEO: GSM729316
GEO: GSM729317
GEO: GSM729318
GEO: GSM729319


10 files Download data files
modENCODE_3222

Snyder UNC-62 GFP L3 L3 stage larvae [ALL]
OP600 [ALL] / unc-62
unc-62 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 7802   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L3_rep1.GFF3: 2885   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L3_rep2.GFF3: 621   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L3_combined.GFF3: 4296   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: UNC62_GFP_L3
GEO: GSM729324
GEO: GSM729325
GEO: GSM729326
GEO: GSM729327


10 files Download data files
modENCODE_3221

Snyder CES-1 GFP L4 L4 stage larvae [ALL]
OP174 [ALL] / ces-1
ces-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4985   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES-1_GFP_L4_rep1.GFF3: 422   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES-1_GFP_L4_rep2.GFF3: 1495   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_CES-1_GFP_L4_combined.GFF3: 3068   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: CES1_GFP_L4
GEO: GSM729320
GEO: GSM729321
GEO: GSM729322
GEO: GSM729323


10 files Download data files
modENCODE_3223

Snyder NHR-28 GFP L4 L4 stage larvae [ALL]
OP317 [ALL] / nhr-28
nhr-28 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 22483   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-28_GFP_L4_rep1.GFF3: 7544   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-28_GFP_L4_rep2.GFF3: 5548   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-28_GFP_L4_combined.GFF3: 9391   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: NHR28_GFP_L4
GEO: GSM729328
GEO: GSM729329
GEO: GSM729330
GEO: GSM729331


10 files Download data files
modENCODE_3353


Related to: modENCODE_584

ChIP-seq PHA4 Starved peaks embargo expired
TFBindingSite: 3101   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


5 files Download data files
modENCODE_585


Related to: modENCODE_3350

Snyder PHA4 GFP FedL1 fed L1 stage larvae [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 8665   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA4_FedL1_GFP
PHA4_FedL1_GFP


7 files Download data files
modENCODE_3366

Snyder DPL-1 GFP L4 L4 stage larvae [ALL]
OP105 [ALL] / dpl-1
dpl-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 24580   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DPL-1_GFP_L4_rep2.GFF3: 5635   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DPL-1_GFP_L4_combined.GFF3: 10234   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DPL-1_GFP_L4_rep1.GFF3: 8711   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: DPL-1_GFP_L4
GEO: GSM1076645
GEO: GSM1076646
GEO: GSM1076647
GEO: GSM1076648


10 files Download data files
modENCODE_584


Related to: modENCODE_3353

Snyder PHA4 StarvedL1 GFP starved L1 stage larvae [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 7382   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA4_StarvedL1_GFP
PHA4_StarvedL1_GFP
GEO: GSM363862
GEO: GSM363863


7 files Download data files
modENCODE_3367

Snyder C16A3.4 GFP L1 fed L1 stage larvae [ALL]
OP345 [ALL] / C16A3.4
C16A3.4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 6596   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C16A3.4_GFP_L1_rep1.GFF3: 1569   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C16A3.4_GFP_L1_combined.GFF3: 3248   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C16A3.4_GFP_L1_rep2.GFF3: 1779   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_C16A3.4_COMB
Snyder_ANTIGFP_WIG_C16A3.4_COMB
GEO: GSM1076649
GEO: GSM1076650
GEO: GSM1076651
GEO: GSM1076652


10 files Download data files
modENCODE_3369

Snyder SKN-1 GFP L2 L2 stage larvae [ALL]
OP178 [ALL] / skn-1
skn-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 19810   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SKN-1_GFP_L2_combined.GFF3: 10068   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SKN-1_GFP_L2_rep1.GFF3: 8418   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_SKN-1_GFP_L2_rep2.GFF3: 1324   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SKN1_GFP_L2
GEO: Snyder_SKN-1_GFP_L2_rep1


10 files Download data files
modENCODE_3370

Snyder NHR-129 GFP L2 L2 stage larvae [ALL]
OP339 [ALL] / nhr-129
nhr-129 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 25802   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-129_GFP_L2_rep1.GFF3: 7583   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-129_GFP_L2_combined.GFF3: 11110   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-129_GFP_L2_rep2.GFF3: 7109   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_NHR-129_L2_COMB
GEO: GSM1183625
GEO: GSM1183626
GEO: GSM1183627
GEO: GSM1183628


10 files Download data files
modENCODE_3254

Snyder UNC-62 GFP L2 L2 stage larvae [ALL]
OP600 [ALL] / unc-62
unc-62 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4183   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L2_rep2.GFF3: 465   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L2_rep1.GFF3: 1214   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L2_combined.GFF3: 2504   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: UNC62_GFP_L2
GEO: GSM729336
GEO: GSM729337
GEO: GSM729338
GEO: GSM729339


10 files Download data files
modENCODE_3330

ChIP-seq ALR1 L2 peaks embargo expired
TFBindingSite: 2147   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_ALR1_RECALL


5 files Download data files
modENCODE_3332


Related to: modENCODE_734

ChIP-seq CEH14 L2 peaks embargo expired
TFBindingSite: 1170   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_WIG_CEH14_RECALL


5 files Download data files
modENCODE_734


Related to: modENCODE_3332

Snyder CEH-14 GFP L2 L2 stage larvae [ALL]
OP73 [ALL] / ceh-14
ceh-14 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 5741   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_CEH14_COMB
Snyder_ANTIGFP_WIG_CEH14_COMB
SNYDER_ANTIGFP_WIG_CEH14_RECALL
GEO: GSM435291
GEO: GSM435292
GEO: GSM435293


6 files Download data files
modENCODE_3338


Related to: modENCODE_3372

ChIP-seq EOR1 L3 peaks embargo expired
TFBindingSite: 3885   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_EOR1_RECALL


5 files Download data files
modENCODE_3372


Related to: modENCODE_3338

Snyder EOR-1 GFP L3 L3 stage larvae [ALL]
OP81 [ALL] / eor-1
eor-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 35351   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_rep1.GFF3: 8654   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_rep2.GFF3: 9543   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_EOR-1_GFP_L3_combined.GFF3: 17154   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: EOR1_GFP_L3_2
SNYDER_ANTIGFP_EOR1_RECALL
GEO: GSM729344
GEO: GSM729345
GEO: GSM729346
GEO: GSM729347


10 files Download data files
modENCODE_3345


Related to: modENCODE_593

ChIP-seq MAB5 L3 peaks embargo expired
TFBindingSite: 1460   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_COMB_MAB5_RECALL


5 files Download data files
modENCODE_593


Related to: modENCODE_3345

Snyder MAB5 GFP L3 L3 stage larvae [ALL]
OP26 [ALL] / mab-5
mab-5 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4439   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: MAB5_L3_GFP
Snyder_ANTIGFP_COMB_MAB5_RECALL
GEO: GSM391226
GEO: GSM391227
GEO: GSM391228
GEO: GSM391229


7 files Download data files
modENCODE_3349


Related to: modENCODE_582

ChIP-seq PHA4 EMB peaks embargo expired
TFBindingSite: 4364   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


5 files Download data files
modENCODE_582


Related to: modENCODE_3349

Snyder PHA4 GFP emb Embryo [ALL]
OP37 [ALL] / pha-4
pha-4 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 9029   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: PHA4_emb_GFP
PHA4_emb_GFP
GEO: GSM363860
GEO: GSM363861


7 files Download data files
modENCODE_3350


Related to: modENCODE_585

ChIP-seq PHA4 L1 peaks embargo expired
TFBindingSite: 5463   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]


5 files Download data files
modENCODE_3380

Snyder DAF-12 GFP L4 L4 stage larvae [ALL]
OP222 [ALL]
daf-12 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 275   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L4_rep1.GFF3: 78   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L4_rep2.GFF3: 22   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L4_combined.GFF3: 175   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: DAF12_GFP_L4
GEO: GSM729368
GEO: GSM729369
GEO: GSM729370
GEO: GSM729371


10 files Download data files
modENCODE_3379

Snyder F45C12.2 GFP L2 L2 stage larvae [ALL]
OP212 [ALL]
F45C12.2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2599   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L2_rep2.GFF3: 851   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L2_combined.GFF3: 1540   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L2_rep1.GFF3: 208   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: F45C12.2_GFP_L2
GEO: GSM1076653
GEO: GSM1076654
GEO: GSM1076655
GEO: GSM1076656


10 files Download data files
modENCODE_3378

Snyder F45C12.2 GFP L3 L3 stage larvae [ALL]
OP212 [ALL]
F45C12.2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4065   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L3_rep1.GFF3: 1582   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L3_rep2.GFF3: 384   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_F45C12.2_GFP_L3_combined.GFF3: 2099   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: F45C12.2_GFP_L3
GEO: GSM729364
GEO: GSM729365
GEO: GSM729366
GEO: GSM729367


10 files Download data files
modENCODE_3383

Snyder ALY-2 GFP L2 L2 stage larvae [ALL]
OP217 [ALL]
aly-2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 9423   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L2_rep2.GFF3: 3283   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L2_combined.GFF3: 3543   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L2_rep1.GFF3: 2597   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ALY-2_GFP_L2
GEO: GSM1076657
GEO: GSM1076658
GEO: GSM1076659
GEO: GSM1076660


10 files Download data files
modENCODE_3382

Snyder ALY-2 GFP L3 L3 stage larvae [ALL]
OP217 [ALL]
aly-2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 9183   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L3_rep2.GFF3: 2629   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L3_rep1.GFF3: 1775   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ALY-2_GFP_L3_combined.GFF3: 4779   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ALY2_GFP_L3
GEO: GSM729376
GEO: GSM729377
GEO: GSM729378
GEO: GSM729379


10 files Download data files
modENCODE_3381

Snyder DAF-12 GFP L3 L3 stage larvae [ALL]
OP222 [ALL]
daf-12 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 2066   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L3_rep2.GFF3: 391   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L3_combined.GFF3: 1251   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_DAF-12_GFP_L3_rep1.GFF3: 424   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: DAF12_GFP_L3_OP222
GEO: GSM729372
GEO: GSM729373
GEO: GSM729374
GEO: GSM729375


10 files Download data files
modENCODE_3373

Snyder GEI-11 GFP L1 fed L1 stage larvae [ALL]
OP179 [ALL] / gei-11
gei-11 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 12742   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L1_rep2.GFF3: 3722   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L1_combined.GFF3: 5999   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_GEI-11_GFP_L1_rep1.GFF3: 3021   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: GEI-11_L1


10 files Download data files
modENCODE_3371

Snyder C01B12.2 GFP L2 L2 stage larvae [ALL]
OP343 [ALL] / C01B12.2
C01B12.2 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 19698   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C01B12.2_GFP_L2_combined.GFF3: 9452   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C01B12.2_GFP_L2_rep2.GFF3: 9109   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_C01B12.2_GFP_L2_rep1.GFF3: 1137   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: SNYDER_ANTIGFP_CHIPCHIP_C01B12
SNYDER_ANTIGFP_CHIPCHIP_C01B12
GEO: GSM729340
GEO: GSM729341
GEO: GSM729342
GEO: GSM729343


10 files Download data files
modENCODE_3376

Snyder ZAG-1 GFP L3 L3 stage larvae [ALL]
OP83 [ALL] / zag-1
zag-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 4454   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L3_combined.GFF3: 2494   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L3_rep1.GFF3: 670   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L3_rep2.GFF3: 1290   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ZAG1_GFP_L3
GEO: GSM729356
GEO: GSM729357
GEO: GSM729358
GEO: GSM729359


10 files Download data files
modENCODE_3377

Snyder ZAG-1 GFP L1 fed L1 stage larvae [ALL]
OP83 [ALL] / zag-1
zag-1 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 3636   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L1_rep2.GFF3: 1131   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L1_rep1.GFF3: 291   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_ZAG-1_GFP_L1_combined.GFF3: 2214   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: ZAG1_GFP_L1
GEO: GSM729360
GEO: GSM729361
GEO: GSM729362
GEO: GSM729363


10 files Download data files
modENCODE_3375

Snyder UNC-62 GFP L1 fed L1 stage larvae [ALL]
OP600 [ALL] / unc-62
unc-62 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 1769   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L1_rep1.GFF3: 88   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L1_combined.GFF3: 1245   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_UNC-62_GFP_L1_rep2.GFF3: 436   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: UNC62_GFP_L1
GEO: GSM729352
GEO: GSM729353
GEO: GSM729354
GEO: GSM729355


10 files Download data files
modENCODE_3374

Snyder NHR-6v2 GFP L2 L2 stage larvae [ALL]
OP90 [ALL] / nhr-6
nhr-6 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 17820   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-6v2_GFP_L2_rep1.GFF3: 6496   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-6v2_GFP_L2_rep2.GFF3: 2801   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-6v2_GFP_L2_combined.GFF3: 8523   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
  [find nearby features]
GBrowse tracks: Snyder_ANTIGFP_WIG_COMB_NHR6v2_L2_GFP
Snyder_ANTIGFP_WIG_COMB_NHR6v2_L2_GFP
GEO: GSM729348
GEO: GSM729349
GEO: GSM729350
GEO: GSM729351


10 files Download data files
modENCODE_3594

Snyder NHR-77 GFP L1 fed L1 stage larvae [ALL]
OP353 [ALL]
nhr-77 [ALL]
20 degree celsius [ALL]
embargo expired
? BindingSite: 11517   export: TAB   CSV  GFF3  (for UCSC)  SEQ    create LIST
Snyder_NHR-77_GFP_L1_combined.GFF3: 6048   export: TAB   CSV  GFF3  (for UCSC)  SEQ